Genetic Variants in Potassium Channel Genes and Their Clinical Implications in Kazakhstani Patients with Cardiac Arrhythmias

<b>Background/Objectives</b>: Cardiac arrhythmias are among the leading causes of sudden cardiac death (SCD). Pathogenic variants in potassium channel genes play a key role in inherited arrhythmia syndromes, yet their contribution in Central Asian populations remains poorly characterized. <b>Methods</b>: We performed targeted next-generation sequencing (NGS) using a 96-gene custom Haloplex panel in 79 Kazakhstani patients with clinically diagnosed arrhythmias, including atrioventricular block, sick sinus syndrome, and atrial fibrillation. Detected variants in potassium channel genes were classified according to ACMG guidelines and correlated with clinical phenotypes. <b>Results</b>: A total of 52 variants were identified across 11 potassium channel genes. Two likely pathogenic variants (<i>KCNH2</i> p.Cys66Gly and p.Arg176Trp) and six variants of uncertain significance (VUS) in <i>KCNQ1</i>, <i>KCNE2</i>, <i>KCNE3</i>, and <i>KCNJ8</i> were detected. Two novel previously unreported variants were found in <i>KCNE5</i> and <i>KCND3.</i> Patients harboring pathogenic variants commonly presented with early-onset arrhythmias or a positive family history of cardiovascular disease. Carriers of <i>KCNH2</i> variants exhibited mild QT prolongation and recurrent syncope. <b>Conclusions</b>: This is the first genetic study of potassium channel gene mutations in Kazakhstani patients with cardiac arrhythmias. The detection of pathogenic and novel variants highlights the clinical utility of integrating genetic testing into diagnostic and management pathways for arrhythmia syndromes. Population-specific genomic data are essential for improving risk stratification, guiding medication safety, and enabling cascade family screening in Central Asia.

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Journal
Journal of Personalized Medicine
Published
2026-01-26
DOI
https://doi.org/10.3390/jpm16020060
Primary Topic
Cardiac electrophysiology and arrhythmias
Type
article
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article

Genetic Variants in Potassium Channel Genes and Their Clinical Implications in Kazakhstani Patients with Cardiac Arrhythmias

Ainur R. Akilzhanova, M. Zhalbinova, Askhat Molkenov, Gulbanu Akilzhanova et al.
Journal of Personalized Medicine
Cardiac electrophysiology and arrhythmias
article

Genetic Variants in Potassium Channel Genes and Their Clinical Implications in Kazakhstani Patients with Cardiac Arrhythmias

Ainur R. Akilzhanova, M. Zhalbinova, Askhat Molkenov, Gulbanu Akilzhanova, Kenes R. Akilzhanov, Nurlan K. Shaimardanov, Saule Rakhimova, Ayan Abdrakhmanov, Ulykbek Kairov, Куанышева А.Г., A. Chamoieva, Makhabbat S. Bekbossynova, Asset Daniyarov, Zhannur Abilova, Ainur Akhmetova
article en

Abstract

<b>Background/Objectives</b>: Cardiac arrhythmias are among the leading causes of sudden cardiac death (SCD). Pathogenic variants in potassium channel genes play a key role in inherited arrhythmia syndromes, yet their contribution in Central Asian populations remains poorly characterized. <b>Methods</b>: We performed targeted next-generation sequencing (NGS) using a 96-gene custom Haloplex panel in 79 Kazakhstani patients with clinically diagnosed arrhythmias, including atrioventricular block, sick sinus syndrome, and atrial fibrillation. Detected variants in potassium channel genes were classified according to ACMG guidelines and correlated with clinical phenotypes. <b>Results</b>: A total of 52 variants were identified across 11 potassium channel genes. Two likely pathogenic variants (<i>KCNH2</i> p.Cys66Gly and p.Arg176Trp) and six variants of uncertain significance (VUS) in <i>KCNQ1</i>, <i>KCNE2</i>, <i>KCNE3</i>, and <i>KCNJ8</i> were detected. Two novel previously unreported variants were found in <i>KCNE5</i> and <i>KCND3.</i> Patients harboring pathogenic variants commonly presented with early-onset arrhythmias or a positive family history of cardiovascular disease. Carriers of <i>KCNH2</i> variants exhibited mild QT prolongation and recurrent syncope. <b>Conclusions</b>: This is the first genetic study of potassium channel gene mutations in Kazakhstani patients with cardiac arrhythmias. The detection of pathogenic and novel variants highlights the clinical utility of integrating genetic testing into diagnostic and management pathways for arrhythmia syndromes. Population-specific genomic data are essential for improving risk stratification, guiding medication safety, and enabling cascade family screening in Central Asia.

Journal of Personalized MedicineVol. 16(2)
L. N. Gumilyov Eurasian National University (KZ), National Academy of Sciences of the Republic of Kazakhstan (KZ), Semey Medical University (KZ), Astana Medical University (KZ), Academy of Public Administration (AZ), Nazarbayev University (KZ)
Good health and well-being
Openalex Percentile: Top 79%
Cardiac electrophysiology and arrhythmias
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