SqueakPose Studio: An end-to-end platform for pose estimation and real-time edge-AI deployment

Accurate pose estimation underpins quantitative analysis of behavior, yet many deep learning-based tracking tools remain optimized for offline workflows that rely on fragmented software pipelines, workstation-grade GPUs, or external middleware to enable real-time deployment. Here we present an integrated software-hardware ecosystem for pose estimation that spans dataset creation, model training, offline analysis, and real-time deployment on embedded edge-computing devices. SqueakPose Studio provides a software suite for whole-frame, deep learning-based pose estimation that unifies dataset creation, manual and model-assisted labeling, model training, validation, and large-scale offline inference. The system leverages modern object-detection architectures to enable efficient end-to-end training and inference without patch-based sampling or multi-stage postprocessing, and supports execution on CPUs, GPUs, and Apple Silicon. For experimental settings requiring continuous recording and synchronized data acquisition, SqueakView enables real-time model deployment, video capture, and sensor logging on embedded edge-computing hardware, while MouseHouse provides a compact, modular enclosure designed for home cage-based experiments that integrates embedded GPU compute, microcontroller-based timing, and peripheral I/O. A shared data format and deterministic timing architecture ensure consistency across offline analysis and real-time deployment. Together, SqueakPose Studio, SqueakView, and MouseHouse provide a unified platform for pose estimation that supports both conventional offline analysis and embedded, real-time experimentation, without reliance on workstation-grade hardware or external middleware.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-26
DOI
https://doi.org/10.64898/2026.01.24.700912
Citations
1
Primary Topic
Robot Manipulation and Learning
Type
article
Field-Weighted Citation Impact
25.04

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article

SqueakPose Studio: An end-to-end platform for pose estimation and real-time edge-AI deployment

David L. Haggerty, Lovinger Dm, Caleb B. Darden
1 citations
bioRxiv (Cold Spring Harbor Laboratory)
Robot Manipulation and Learning
25.04
article

SqueakPose Studio: An end-to-end platform for pose estimation and real-time edge-AI deployment

David L. Haggerty, Lovinger Dm, Caleb B. Darden
article en
1 citations

Abstract

Accurate pose estimation underpins quantitative analysis of behavior, yet many deep learning-based tracking tools remain optimized for offline workflows that rely on fragmented software pipelines, workstation-grade GPUs, or external middleware to enable real-time deployment. Here we present an integrated software-hardware ecosystem for pose estimation that spans dataset creation, model training, offline analysis, and real-time deployment on embedded edge-computing devices. SqueakPose Studio provides a software suite for whole-frame, deep learning-based pose estimation that unifies dataset creation, manual and model-assisted labeling, model training, validation, and large-scale offline inference. The system leverages modern object-detection architectures to enable efficient end-to-end training and inference without patch-based sampling or multi-stage postprocessing, and supports execution on CPUs, GPUs, and Apple Silicon. For experimental settings requiring continuous recording and synchronized data acquisition, SqueakView enables real-time model deployment, video capture, and sensor logging on embedded edge-computing hardware, while MouseHouse provides a compact, modular enclosure designed for home cage-based experiments that integrates embedded GPU compute, microcontroller-based timing, and peripheral I/O. A shared data format and deterministic timing architecture ensure consistency across offline analysis and real-time deployment. Together, SqueakPose Studio, SqueakView, and MouseHouse provide a unified platform for pose estimation that supports both conventional offline analysis and embedded, real-time experimentation, without reliance on workstation-grade hardware or external middleware.

bioRxiv (Cold Spring Harbor Laboratory)
National Institute on Alcohol Abuse and Alcoholism (US)
National Institutes of Health, National Institute on Alcohol Abuse and Alcoholism, National Institute of General Medical Sciences
Openalex Percentile: Top 1%
Robot Manipulation and Learning
25.04
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