Machine Learning forecasting of dengue in São Paulo using virtual data augmentation and urban incident predictors: Addressing the exceptional surge of cases in 2024

Dengue remains one of the most critical vector-borne diseases globally, with Brazil consistently reporting the highest incidence in the Americas. The 2024 epidemic was the largest in the country's history, with São Paulo as its epicenter. This study developed and evaluated a machine learning (ML) framework to forecast dengue under extreme epidemic conditions, focusing on enhancing model robustness when testing data exceed the range of historical observations. A novel virtual data augmentation strategy was introduced to expose models to synthetic large-scale outbreaks and to assess the predictive value of urban incident variables such as flooding and flooded streets. Epidemiological, climatic, and urban incident data from 2014 to 2022 were used for model training, and 2023-mid-2025 for testing. Fourteen ML algorithms were systematically evaluated under multiple preprocessing configurations, including feature scaling, lagged predictors, feature combinations, data augmentation, and feature reduction. Forecasts targeted probable, confirmed, severe, and fatal dengue cases at a one-week horizon. The algorithms AdaBoost and CatBoost achieved the highest predictive accuracy. Virtual data augmentation substantially improved robustness when test values exceeded training maxima, reducing RMSE by up to 80% for probable and confirmed cases, 42% for severe cases, and 53% for deaths compared with models trained on unaugmented data. Flooding-related indicators, especially flooded-street case counts, were among the most influential predictors. The proposed ML framework accurately forecasted dengue incidence and severity during the unprecedented 2024 outbreak. The virtual augmentation method effectively managed distributional shifts and extreme epidemic magnitudes, providing a transferable foundation for early-warning systems and public-health preparedness in urban settings.

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Publication Details

Journal
Acta Tropica
Published
2026-01-26
DOI
https://doi.org/10.1016/j.actatropica.2026.107992
Citations
1
Primary Topic
Mosquito-borne diseases and control
Type
article
Field-Weighted Citation Impact
41.85
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article

Machine Learning forecasting of dengue in São Paulo using virtual data augmentation and urban incident predictors: Addressing the exceptional surge of cases in 2024

Tiago Dias Martins, Iara Rocha Antunes Pereira Bresolin, Rodrigo Seiti Sacay, Jorge Luiz Mendes et al.
1 citations
Acta Tropica
Mosquito-borne diseases and control
41.85
article

Machine Learning forecasting of dengue in São Paulo using virtual data augmentation and urban incident predictors: Addressing the exceptional surge of cases in 2024

Tiago Dias Martins, Iara Rocha Antunes Pereira Bresolin, Rodrigo Seiti Sacay, Jorge Luiz Mendes, Joana Bratz Lourenço, Mohamad Al Bannoud
article en
1 citations

Abstract

Dengue remains one of the most critical vector-borne diseases globally, with Brazil consistently reporting the highest incidence in the Americas. The 2024 epidemic was the largest in the country's history, with São Paulo as its epicenter. This study developed and evaluated a machine learning (ML) framework to forecast dengue under extreme epidemic conditions, focusing on enhancing model robustness when testing data exceed the range of historical observations. A novel virtual data augmentation strategy was introduced to expose models to synthetic large-scale outbreaks and to assess the predictive value of urban incident variables such as flooding and flooded streets. Epidemiological, climatic, and urban incident data from 2014 to 2022 were used for model training, and 2023-mid-2025 for testing. Fourteen ML algorithms were systematically evaluated under multiple preprocessing configurations, including feature scaling, lagged predictors, feature combinations, data augmentation, and feature reduction. Forecasts targeted probable, confirmed, severe, and fatal dengue cases at a one-week horizon. The algorithms AdaBoost and CatBoost achieved the highest predictive accuracy. Virtual data augmentation substantially improved robustness when test values exceeded training maxima, reducing RMSE by up to 80% for probable and confirmed cases, 42% for severe cases, and 53% for deaths compared with models trained on unaugmented data. Flooding-related indicators, especially flooded-street case counts, were among the most influential predictors. The proposed ML framework accurately forecasted dengue incidence and severity during the unprecedented 2024 outbreak. The virtual augmentation method effectively managed distributional shifts and extreme epidemic magnitudes, providing a transferable foundation for early-warning systems and public-health preparedness in urban settings.

Acta TropicaVol. 275
Universidade Estadual de Campinas (UNICAMP) (BR), Universidade Federal de São Paulo (BR)
Good health and well-being
Openalex Percentile: Top 1%
Mosquito-borne diseases and control
41.85
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