FAIRmaterials: Ontology Tools with Data FAIRification in Development

The bilingual FAIRmaterials package simplifies the creation and visualization of materials and data science ontologies. FAIRmaterials, available in the Python and R languages, addresses the complexities associated with traditional ontology editors based on manual user input such as Protege (Musen, 2015) with an intuitive workflow and easy-to-use templates, making it accessible to users both experienced and inexperienced with ontologies. The FAIRmaterials package is its ability to programatically convert simple and structured CSV inputs into rich, well-defined ontologies. This capability is designed to support the findability, accessibility, interoperability, and reusability (FAIR) (Wilkinson et al., 2016) of research data and serve as a tool in the process of data FAIRification. Its additional features, such as automated ontology merging, static visualizations, and comprehensive documentation for outputs extend its utility, making it a valuable tool for any researcher engaged in knowledge management.

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Publication Details

Journal
The Journal of Open Source Software
Published
2026-01-26
DOI
https://doi.org/10.21105/joss.07287
Primary Topic
Research Data Management Practices
Type
article
Field-Weighted Citation Impact
0.00

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article

FAIRmaterials: Ontology Tools with Data FAIRification in Development

Y. Wu, Erika I. Barcelos, A. Bradley, Hayden W. Caldwell et al.
The Journal of Open Source Software
Research Data Management Practices
article

FAIRmaterials: Ontology Tools with Data FAIRification in Development

Y. Wu, Erika I. Barcelos, A. Bradley, Hayden W. Caldwell, Laura S. Bruckman, Jonathan E Gordon, Nathaniel Hahn, Kiefer Lin, V.N. Tran, Balashanmuga Priyan Rajamohan, Quynh D Tran, Roger H. French
article en

Abstract

The bilingual FAIRmaterials package simplifies the creation and visualization of materials and data science ontologies. FAIRmaterials, available in the Python and R languages, addresses the complexities associated with traditional ontology editors based on manual user input such as Protege (Musen, 2015) with an intuitive workflow and easy-to-use templates, making it accessible to users both experienced and inexperienced with ontologies. The FAIRmaterials package is its ability to programatically convert simple and structured CSV inputs into rich, well-defined ontologies. This capability is designed to support the findability, accessibility, interoperability, and reusability (FAIR) (Wilkinson et al., 2016) of research data and serve as a tool in the process of data FAIRification. Its additional features, such as automated ontology merging, static visualizations, and comprehensive documentation for outputs extend its utility, making it a valuable tool for any researcher engaged in knowledge management.

The Journal of Open Source SoftwareVol. 11(117)
Marine Stewardship Council (GB), Case Western Reserve University (US)
National Science Foundation, U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy, National Nuclear Security Administration, Solar Energy Technologies Office, Office of Energy Efficiency
Openalex Percentile: Top 85%
Research Data Management Practices
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