BCLAF1 links RNA splicing to ATF4-dependent metabolic adaptation in acute myeloid leukemia

Acute myeloid leukemia (AML) is driven by a combination of genetic alterations and non-mutational mechanisms that disrupt normal hematopoiesis and support leukemic cell survival. While the mutational landscape of AML is well characterized, the non-genetic processes that sustain leukemic maintenance remain comparatively less understood. Using human AML cell lines and murine models of AML, we identify BCL2-associated transcription factor 1 (BCLAF1) as a key regulator of leukemic progression through control of mRNA processing. BCLAF1 physically associates with core spliceosome components and regulates alternative splicing, with a predominant effect on intron retention. We demonstrate that BCLAF1 is required for the productive splicing of activating transcription factor 4 (ATF4) mRNA, thereby sustaining ATF4 protein expression. Loss of BCLAF1 reduces ATF4 protein levels, leading to downregulation of metabolic target genes and disruption of <i>de novo</i> amino acid biosynthesis. Furthermore, depletion of BCLAF1 sensitizes AML cells to venetoclax, a clinically relevant BCL-2 inhibitor. Together, these findings uncover a previously unrecognized role for BCLAF1 in coordinating mRNA splicing and metabolic adaptation in AML, highlighting its potential as a therapeutic target.

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Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-22
DOI
https://doi.org/10.64898/2026.01.19.700325
Primary Topic
RNA Research and Splicing
Type
article
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article

BCLAF1 links RNA splicing to ATF4-dependent metabolic adaptation in acute myeloid leukemia

Patrick Toolan-Kerr, Gonzalo Millán-Zambrano, Sara Cea-Sánchez, Lynn S. White et al.
bioRxiv (Cold Spring Harbor Laboratory)
RNA Research and Splicing
article

BCLAF1 links RNA splicing to ATF4-dependent metabolic adaptation in acute myeloid leukemia

Patrick Toolan-Kerr, Gonzalo Millán-Zambrano, Sara Cea-Sánchez, Lynn S. White, Román González‐Prieto, Isaia Barbieri, Luca Pandolfini, Emily Soto-Hidalgo, Laura López-Hernández, Neetij Krishnan, Ricardo de Arellano, Domenico Ignoti, Stephanie J. Crowley, Stefano Gustincich, Jeffrey A. Magee, Jeffrey J Bednarsk, Patricia Altea-Manzano
article en

Abstract

Acute myeloid leukemia (AML) is driven by a combination of genetic alterations and non-mutational mechanisms that disrupt normal hematopoiesis and support leukemic cell survival. While the mutational landscape of AML is well characterized, the non-genetic processes that sustain leukemic maintenance remain comparatively less understood. Using human AML cell lines and murine models of AML, we identify BCL2-associated transcription factor 1 (BCLAF1) as a key regulator of leukemic progression through control of mRNA processing. BCLAF1 physically associates with core spliceosome components and regulates alternative splicing, with a predominant effect on intron retention. We demonstrate that BCLAF1 is required for the productive splicing of activating transcription factor 4 (ATF4) mRNA, thereby sustaining ATF4 protein expression. Loss of BCLAF1 reduces ATF4 protein levels, leading to downregulation of metabolic target genes and disruption of <i>de novo</i> amino acid biosynthesis. Furthermore, depletion of BCLAF1 sensitizes AML cells to venetoclax, a clinically relevant BCL-2 inhibitor. Together, these findings uncover a previously unrecognized role for BCLAF1 in coordinating mRNA splicing and metabolic adaptation in AML, highlighting its potential as a therapeutic target.

bioRxiv (Cold Spring Harbor Laboratory)
Washington University in St. Louis (US), Italian Institute of Technology (IT), Centro Andaluz de Biología Molecular y Medicina Regenerativa (ES), University of Turin (IT), Universidad de Sevilla (ES), Universidad Pablo de Olavide (ES)
Responsible consumption and production
Openalex Percentile: Top 79%
RNA Research and Splicing
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