Discovery and Preliminary Characterization of Lactose-Transforming Enzymes in Ewingella americana L47: A Genomic, Biochemical, and In Silico Approach

D-tagatose is a high-value, low-calorie sweetener that can be produced from dairy lactose via a two-step enzymatic route: lactose hydrolysis to galactose followed by galactose isomerization to tagatose. Here, we combined genomics, in silico structural analysis, and biochemical assays to evaluate the lactose-to-tagatose conversion potential of an Antarctic isolate, L47, identified as <i>Ewingella americana</i> (NCBI accession SAMN54554459). Genome mining revealed one L-arabinose isomerase gene (<i>araA</i>) and three β-galactosidase genes (<i>bgaA</i>, <i>bglY</i>, <i>lacZ</i>), an uncommon combination in a single bacterium. Recombinant AraA was produced in <i>Escherichia coli</i> and biochemically characterized, showing Mn<sup>2+</sup> dependence and measurable D-galactose isomerization, reaching ~18% tagatose from 100 mM galactose after 48 h under the tested conditions. In contrast, the β-galactosidases were predominantly recovered as insoluble aggregates in <i>E. coli</i>; therefore, β-galactosidase activity was assessed using washed inclusion-body preparations. Under these conditions, BgaA displayed the most consistent o-NPG hydrolyzing activity, whereas BglY and LacZ did not yield reproducible activity. Overall, our results identify BgaA as the most tractable lactose-hydrolyzing candidate from L47 in the current workflow and indicate that AraA performance is the principal bottleneck toward an efficient lactose-to-tagatose process, motivating future optimization at the enzyme and process levels.

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Journal
International Journal of Molecular Sciences
Published
2026-01-22
DOI
https://doi.org/10.3390/ijms27021128
Primary Topic
Diet, Metabolism, and Disease
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article
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article

Discovery and Preliminary Characterization of Lactose-Transforming Enzymes in Ewingella americana L47: A Genomic, Biochemical, and In Silico Approach

Fernanda Contreras, Claudia Muñoz-Villagrán, Jans H. Alzate‐Morales, Felipe Arenas et al.
International Journal of Molecular Sciences
Diet, Metabolism, and Disease
article

Discovery and Preliminary Characterization of Lactose-Transforming Enzymes in Ewingella americana L47: A Genomic, Biochemical, and In Silico Approach

Fernanda Contreras, Claudia Muñoz-Villagrán, Jans H. Alzate‐Morales, Felipe Arenas, Carlos Vera, Karina Rivero, Nicole Neira, Inaira Rivero, Mauricio Arenas-Salinas, Rodrigo Valenzuela, Pedro General
article en

Abstract

D-tagatose is a high-value, low-calorie sweetener that can be produced from dairy lactose via a two-step enzymatic route: lactose hydrolysis to galactose followed by galactose isomerization to tagatose. Here, we combined genomics, in silico structural analysis, and biochemical assays to evaluate the lactose-to-tagatose conversion potential of an Antarctic isolate, L47, identified as <i>Ewingella americana</i> (NCBI accession SAMN54554459). Genome mining revealed one L-arabinose isomerase gene (<i>araA</i>) and three β-galactosidase genes (<i>bgaA</i>, <i>bglY</i>, <i>lacZ</i>), an uncommon combination in a single bacterium. Recombinant AraA was produced in <i>Escherichia coli</i> and biochemically characterized, showing Mn<sup>2+</sup> dependence and measurable D-galactose isomerization, reaching ~18% tagatose from 100 mM galactose after 48 h under the tested conditions. In contrast, the β-galactosidases were predominantly recovered as insoluble aggregates in <i>E. coli</i>; therefore, β-galactosidase activity was assessed using washed inclusion-body preparations. Under these conditions, BgaA displayed the most consistent o-NPG hydrolyzing activity, whereas BglY and LacZ did not yield reproducible activity. Overall, our results identify BgaA as the most tractable lactose-hydrolyzing candidate from L47 in the current workflow and indicate that AraA performance is the principal bottleneck toward an efficient lactose-to-tagatose process, motivating future optimization at the enzyme and process levels.

International Journal of Molecular SciencesVol. 27(2)
Universidad de Santiago de Chile (CL), Universidad Mayor (CL), University of Talca (CL)
Life below water
Openalex Percentile: Top 80%
Diet, Metabolism, and Disease
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