Transformer-Driven Semi-Supervised Learning for Prostate Cancer Histopathology: A DINOv2–TransUNet Framework

Prostate cancer is diagnosed through a comprehensive study of histopathology slides, which takes time and requires professional interpretation. To minimize this load, we developed a semi-supervised learning technique that combines transformer-based representation learning and a custom TransUNet classifier. To capture a wide range of morphological structures without manual annotation, our method pretrains DINOv2 on 10,000 unlabeled prostate tissue patches. After receiving the transformer-derived features, a bespoke CNN-based decoder uses residual upsampling and carefully constructed skip connections to merge data from many spatial scales. Expert pathologists identified only 20% of the patches in the whole dataset; the remaining unlabeled samples were contributed by using a consistency-driven learning method that promoted reliable predictions across various augmentations. The model received precision and recall scores of 91.81% and 89.02%, respectively, and an accuracy of 93.78% on an additional test set. These results exceed the performance of a conventional U-Net and a baseline encoder–decoder network. All things considered, the localized CNN (Convolutional Neural Network) decoding and global transformer attention provide a reliable method for prostate cancer classification in situations with little annotated data.

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Institutions

Publication Details

Journal
Machine Learning and Knowledge Extraction
Published
2026-01-23
DOI
https://doi.org/10.3390/make8020026
Citations
1
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
52.10

Funders

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article

Transformer-Driven Semi-Supervised Learning for Prostate Cancer Histopathology: A DINOv2–TransUNet Framework

Jeongwook Seo, H. J. Kim, Rubina Akter Rabeya, Nam Hoon Cho
1 citations
Machine Learning and Knowledge Extraction
AI in cancer detection
52.10
article

Transformer-Driven Semi-Supervised Learning for Prostate Cancer Histopathology: A DINOv2–TransUNet Framework

Jeongwook Seo, H. J. Kim, Rubina Akter Rabeya, Nam Hoon Cho
article en
1 citations

Abstract

Prostate cancer is diagnosed through a comprehensive study of histopathology slides, which takes time and requires professional interpretation. To minimize this load, we developed a semi-supervised learning technique that combines transformer-based representation learning and a custom TransUNet classifier. To capture a wide range of morphological structures without manual annotation, our method pretrains DINOv2 on 10,000 unlabeled prostate tissue patches. After receiving the transformer-derived features, a bespoke CNN-based decoder uses residual upsampling and carefully constructed skip connections to merge data from many spatial scales. Expert pathologists identified only 20% of the patches in the whole dataset; the remaining unlabeled samples were contributed by using a consistency-driven learning method that promoted reliable predictions across various augmentations. The model received precision and recall scores of 91.81% and 89.02%, respectively, and an accuracy of 93.78% on an additional test set. These results exceed the performance of a conventional U-Net and a baseline encoder–decoder network. All things considered, the localized CNN (Convolutional Neural Network) decoding and global transformer attention provide a reliable method for prostate cancer classification in situations with little annotated data.

Machine Learning and Knowledge ExtractionVol. 8(2)
Inje University (KR), Severance Hospital (KR), Sejong General Hospital (KR)
National Research Foundation, National Research Foundation of Korea, Ministry of Science and ICT, South Korea, Institute for Information and Communications Technology Promotion, Division of Human Resource Development
Openalex Percentile: Top 1%
AI in cancer detection
52.10
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Transformer-Driven Semi-Supervised Learning for Prostate Cancer Histopathology: A DINOv2–TransUNet Framework — Jeongwook Seo, H. J. Kim, et al. · Machine Learning and Knowledge Extraction (2026) | TGRS Research Map | TGRS