Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks
Uchimata is released under the MIT License. The Javascript library is available on NPM, while the widget is available as a Python package hosted on PyPI. The source code for both is available publicly on Github (https://github.com/hms-dbmi/uchimata and https://github.com/hms-dbmi/uchimata-py) and Zenodo (https://doi.org/10.5281/zenodo.17831959 and https://doi.org/10.5281/zenodo.17832045). The documentation with examples is hosted at https://hms-dbmi.github.io/uchimata/.
Authors
- Tereza Clarence (ORCID: https://orcid.org/0000-0002-0099-2797)
- Trevor Manz (ORCID: https://orcid.org/0000-0001-7694-5164)
- David Kou
- Nils Gehlenborg
Institutions
- Allen Institute for Brain Science (US)
- Harvard University (US)
- Icahn School of Medicine at Mount Sinai (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2026-01-20
- DOI
- https://doi.org/10.1093/bioinformatics/btag035
- Primary Topic
- Genomics and Chromatin Dynamics
- Type
- article
- Field-Weighted Citation Impact
- 0.00