Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks

Uchimata is released under the MIT License. The Javascript library is available on NPM, while the widget is available as a Python package hosted on PyPI. The source code for both is available publicly on Github (https://github.com/hms-dbmi/uchimata and https://github.com/hms-dbmi/uchimata-py) and Zenodo (https://doi.org/10.5281/zenodo.17831959 and https://doi.org/10.5281/zenodo.17832045). The documentation with examples is hosted at https://hms-dbmi.github.io/uchimata/.

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Publication Details

Journal
Bioinformatics
Published
2026-01-20
DOI
https://doi.org/10.1093/bioinformatics/btag035
Primary Topic
Genomics and Chromatin Dynamics
Type
article
Field-Weighted Citation Impact
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article

Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks

Tereza Clarence, Trevor Manz, David Kou, Nils Gehlenborg
Bioinformatics
Genomics and Chromatin Dynamics
article

Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks

Tereza Clarence, Trevor Manz, David Kou, Nils Gehlenborg
article en

Abstract

Uchimata is released under the MIT License. The Javascript library is available on NPM, while the widget is available as a Python package hosted on PyPI. The source code for both is available publicly on Github (https://github.com/hms-dbmi/uchimata and https://github.com/hms-dbmi/uchimata-py) and Zenodo (https://doi.org/10.5281/zenodo.17831959 and https://doi.org/10.5281/zenodo.17832045). The documentation with examples is hosted at https://hms-dbmi.github.io/uchimata/.

BioinformaticsVol. 42(2)
Allen Institute for Brain Science (US), Harvard University (US), Icahn School of Medicine at Mount Sinai (US)
Openalex Percentile: Top 81%
Genomics and Chromatin Dynamics
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