Scalable Synthetic Data Generation for HDLSS SERRS cTnI Detection via Conditional GMMs

The diagnosis of Myocardial Infarction (MI) can be enhanced through label-free biosensing techniques like Surface-Enhanced Resonance Raman Spectroscopy (SERRS). Machine learning is hindered by data scarcity, excessive dimensionality,<br/>and class imbalance. This paper presents a scalable and interpretable pipeline for generating synthetic data for high-dimensional, low-sample-size (HDLSS) SERRS data. The method combines class-conditional Gaussian Mixture Models (GMMs), physiological renoising through Savitzky–Golay filtering and Gaussian noise, and manifold-constrained filtering using UMAP-KNN to maintain physiological validity. A composite score that integrates fidelity (Wasserstein), diversity (DTW), and generalisability (UMAP acceptance) is used to rank synthetic data configurations during generation. Experimental results indicate that classifiers trained over 5x-scaled synthetic data attain F1 scores of up to 82.35% and ROC AUC of 1.00, surpassing the performance of models trained solely on real data. This lightweight, modular approach offers a scalable alternative to<br/>deep generative models in the context of clinical biosensing.

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Published
2025-10-19
DOI
https://doi.org/10.1109/sensors59705.2025.11330562
Primary Topic
Spectroscopy Techniques in Biomedical and Chemical Research
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article
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article

Scalable Synthetic Data Generation for HDLSS SERRS cTnI Detection via Conditional GMMs

Saugat Bhattacharyya, Liam McDaid, Gerard L. Coté, Sayantan Tripathy et al.
Spectroscopy Techniques in Biomedical and Chemical Research
article

Scalable Synthetic Data Generation for HDLSS SERRS cTnI Detection via Conditional GMMs

Saugat Bhattacharyya, Liam McDaid, Gerard L. Coté, Sayantan Tripathy, Thomas Poudevigne-Durance, Muskaan Singh, Ng Ka Wai, Sahil Sharma, Samuel B. Mabbott
article en

Abstract

The diagnosis of Myocardial Infarction (MI) can be enhanced through label-free biosensing techniques like Surface-Enhanced Resonance Raman Spectroscopy (SERRS). Machine learning is hindered by data scarcity, excessive dimensionality,<br/>and class imbalance. This paper presents a scalable and interpretable pipeline for generating synthetic data for high-dimensional, low-sample-size (HDLSS) SERRS data. The method combines class-conditional Gaussian Mixture Models (GMMs), physiological renoising through Savitzky–Golay filtering and Gaussian noise, and manifold-constrained filtering using UMAP-KNN to maintain physiological validity. A composite score that integrates fidelity (Wasserstein), diversity (DTW), and generalisability (UMAP acceptance) is used to rank synthetic data configurations during generation. Experimental results indicate that classifiers trained over 5x-scaled synthetic data attain F1 scores of up to 82.35% and ROC AUC of 1.00, surpassing the performance of models trained solely on real data. This lightweight, modular approach offers a scalable alternative to<br/>deep generative models in the context of clinical biosensing.

University of Ulster (GB), Texas A&M University (US)
Openalex Percentile: Top 20%
Spectroscopy Techniques in Biomedical and Chemical Research
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