Bayesian Optimization for High-Dimensional Coarse-Grained Model Parameterization: A Case Study on Pebax Polymer

Coarse-grained (CG) force field models are extensively utilized in material simulations because of their scalability. Ordinarily, these models are parametrized using hybrid strategies that sequentially integrate top-down and bottom-up approaches. However, this combination restricts the capacity to jointly optimize all parameters. Although Bayesian optimization (BO) has been explored as an alternative search strategy to identify well-optimized CG parameters, its application has conventionally been limited to low-dimensional scenarios. This has contributed to the assumption that BO is unsuitable for more complex CG models, which often involve a large number of parameters. In this study, we challenge this assumption by successfully extending BO, using the tree-structured Parzen estimator (TPE) model, to optimize a high-dimensional CG model. Specifically, we show that a 41-parameter CG model of Pebax-1657, a copolymer composed of alternating polyamide and polyether segments, can be effectively parametrized using BO, resulting in a model that accurately reproduces the key physical properties of its parent atomistic representation. Our optimization framework simultaneously targets structural and thermodynamic properties, namely, density, radius of gyration, and glass transition temperature. Compared to traditional search algorithms, BO-TPE not only converges faster but also delivers consistent improvements over more standard parametrization approaches.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2026-01-21
DOI
https://doi.org/10.1021/acs.jctc.5c01500
Primary Topic
Block Copolymer Self-Assembly
Type
article
Field-Weighted Citation Impact
0.00

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article

Bayesian Optimization for High-Dimensional Coarse-Grained Model Parameterization: A Case Study on Pebax Polymer

Erich A. Müller, C. Miranda, Rodrigo A. Vargas–Hernández, Daniela Andrade Damasceno et al.
Journal of Chemical Theory and Computation
Block Copolymer Self-Assembly
article

Bayesian Optimization for High-Dimensional Coarse-Grained Model Parameterization: A Case Study on Pebax Polymer

Erich A. Müller, C. Miranda, Rodrigo A. Vargas–Hernández, Daniela Andrade Damasceno, Keat Yung Hue, Carlos A. Martins
article en

Abstract

Coarse-grained (CG) force field models are extensively utilized in material simulations because of their scalability. Ordinarily, these models are parametrized using hybrid strategies that sequentially integrate top-down and bottom-up approaches. However, this combination restricts the capacity to jointly optimize all parameters. Although Bayesian optimization (BO) has been explored as an alternative search strategy to identify well-optimized CG parameters, its application has conventionally been limited to low-dimensional scenarios. This has contributed to the assumption that BO is unsuitable for more complex CG models, which often involve a large number of parameters. In this study, we challenge this assumption by successfully extending BO, using the tree-structured Parzen estimator (TPE) model, to optimize a high-dimensional CG model. Specifically, we show that a 41-parameter CG model of Pebax-1657, a copolymer composed of alternating polyamide and polyether segments, can be effectively parametrized using BO, resulting in a model that accurately reproduces the key physical properties of its parent atomistic representation. Our optimization framework simultaneously targets structural and thermodynamic properties, namely, density, radius of gyration, and glass transition temperature. Compared to traditional search algorithms, BO-TPE not only converges faster but also delivers consistent improvements over more standard parametrization approaches.

Journal of Chemical Theory and ComputationVol. 22(5)
Universidade de São Paulo (BR), Petronas (Malaysia) (MY), Brockhouse Institute for Materials Research (CA), Institute of Physics of the Slovak Academy of Sciences (SK), Imperial College London (GB), McMaster University (CA)
Research Centre for Gas Innovation, Fundação de Amparo à Pesquisa do Estado de São Paulo, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, Conselho Nacional de Desenvolvimento Científico e Tecnológico, Shell Brasil, Natural Sciences and Engineering Research Council of Canada, Engineering and Physical Sciences Research Council
Openalex Percentile: Top 82%
Block Copolymer Self-Assembly
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