Puzzler: scalable one-command platinum-quality genome assembly from HiFi and Hi-C

Puzzler is released into the public domain under 17 U.S.C. §105. Source code, documentation, and tutorials are available at https://github.com/merondun/puzzler and archived on Zenodo: https://doi.org/10.5281/zenodo.15733730 and https://doi.org/10.5281/zenodo.15693025. Pre-configured runtime environments including dependencies are provided via both a Conda environment (https://anaconda.org/heritabilities/puzzler) and an Apptainer hosted both on Zenodo and Sylabs (https://cloud.sylabs.io/library/merondun/default/puzzler).

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Publication Details

Journal
Bioinformatics Advances
Published
2025-12-31
DOI
https://doi.org/10.1093/bioadv/vbaf329
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
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article

Puzzler: scalable one-command platinum-quality genome assembly from HiFi and Hi-C

Justin Meröndun, Qingyi Yu
Bioinformatics Advances
Genomics and Phylogenetic Studies
article

Puzzler: scalable one-command platinum-quality genome assembly from HiFi and Hi-C

Justin Meröndun, Qingyi Yu
article en

Abstract

Puzzler is released into the public domain under 17 U.S.C. §105. Source code, documentation, and tutorials are available at https://github.com/merondun/puzzler and archived on Zenodo: https://doi.org/10.5281/zenodo.15733730 and https://doi.org/10.5281/zenodo.15693025. Pre-configured runtime environments including dependencies are provided via both a Conda environment (https://anaconda.org/heritabilities/puzzler) and an Apptainer hosted both on Zenodo and Sylabs (https://cloud.sylabs.io/library/merondun/default/puzzler).

Bioinformatics AdvancesVol. 6(1)
Hawaii Agriculture Research Center (US), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (US)
Openalex Percentile: Top 34%
Genomics and Phylogenetic Studies
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