Puzzler: scalable one-command platinum-quality genome assembly from HiFi and Hi-C
Puzzler is released into the public domain under 17 U.S.C. §105. Source code, documentation, and tutorials are available at https://github.com/merondun/puzzler and archived on Zenodo: https://doi.org/10.5281/zenodo.15733730 and https://doi.org/10.5281/zenodo.15693025. Pre-configured runtime environments including dependencies are provided via both a Conda environment (https://anaconda.org/heritabilities/puzzler) and an Apptainer hosted both on Zenodo and Sylabs (https://cloud.sylabs.io/library/merondun/default/puzzler).
Authors
- Justin Meröndun (ORCID: https://orcid.org/0000-0001-5077-4096)
- Qingyi Yu
Institutions
- Hawaii Agriculture Research Center (US)
- Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (US)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2025-12-31
- DOI
- https://doi.org/10.1093/bioadv/vbaf329
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00