A Possible Recently Identified Evolutionary Strategy Using Membrane-Bound Vesicle Transfer of Genetic Material to Induce Bacterial Resistance, Virulence and Pathogenicity in Klebsiella oxytoca

<i>Klebsiella oxytoca</i> has emerged as an important opportunistic pathogen in nosocomial infections, particularly during the COVID-19 pandemic, due to its capacity to acquire and disseminate resistance and virulence genes through horizontal gene transfer (HGT). This study presents a genome-based comparative analysis of <i>K. oxytoca</i> within the genus <i>Klebsiella</i>, aimed at exploring the evolutionary plausibility of outer membrane vesicle (OMV) associated processes in bacterial adaptation. Using publicly available reference genomes, we analyzed pangenome structure, phylogenetic relationships, and the distribution of mobile genetic elements, resistance determinants, virulence factors, and genes related to OMV biogenesis. Our results reveal a conserved set of envelope associated and stress responsive genes involved in vesiculogenic pathways, together with an extensive mobilome and resistome characteristic of the genus. Although these genomic features are consistent with conditions that may favor OMV production, they do not constitute direct evidence of functional OMV mediated horizontal gene transfer. Instead, our findings support a hypothesis generating evolutionary framework in which OMVs may act as a complementary mechanism to established gene transfer routes, including conjugation, integrative mobile elements, and bacteriophages. Overall, this study provides a genomic framework for future experimental and metagenomic investigations into the role of OMV-associated processes in antimicrobial resistance dissemination and should be interpreted as a recently identified evolutionary strategy inferred from genomic data, rather than a novel or experimentally validated mechanism.

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Journal
International Journal of Molecular Sciences
Published
2026-01-19
DOI
https://doi.org/10.3390/ijms27020988
Primary Topic
Bacterial Infections and Vaccines
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article
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article

A Possible Recently Identified Evolutionary Strategy Using Membrane-Bound Vesicle Transfer of Genetic Material to Induce Bacterial Resistance, Virulence and Pathogenicity in Klebsiella oxytoca

Yahaíra de Jesús Tamayo-Ordóñez, Ninfa M. Rosas-García, Juan Manuel Bello-López, Benjamín Abraham Ayil-Gutiérrez et al.
International Journal of Molecular Sciences
Bacterial Infections and Vaccines
article

A Possible Recently Identified Evolutionary Strategy Using Membrane-Bound Vesicle Transfer of Genetic Material to Induce Bacterial Resistance, Virulence and Pathogenicity in Klebsiella oxytoca

Yahaíra de Jesús Tamayo-Ordóñez, Ninfa M. Rosas-García, Juan Manuel Bello-López, Benjamín Abraham Ayil-Gutiérrez, Francisco Alberto Tamayo-Ordóñez, Claudia Camelia Calzada-Mendoza, María Concepción Tamayo-Ordóñez
article en

Abstract

<i>Klebsiella oxytoca</i> has emerged as an important opportunistic pathogen in nosocomial infections, particularly during the COVID-19 pandemic, due to its capacity to acquire and disseminate resistance and virulence genes through horizontal gene transfer (HGT). This study presents a genome-based comparative analysis of <i>K. oxytoca</i> within the genus <i>Klebsiella</i>, aimed at exploring the evolutionary plausibility of outer membrane vesicle (OMV) associated processes in bacterial adaptation. Using publicly available reference genomes, we analyzed pangenome structure, phylogenetic relationships, and the distribution of mobile genetic elements, resistance determinants, virulence factors, and genes related to OMV biogenesis. Our results reveal a conserved set of envelope associated and stress responsive genes involved in vesiculogenic pathways, together with an extensive mobilome and resistome characteristic of the genus. Although these genomic features are consistent with conditions that may favor OMV production, they do not constitute direct evidence of functional OMV mediated horizontal gene transfer. Instead, our findings support a hypothesis generating evolutionary framework in which OMVs may act as a complementary mechanism to established gene transfer routes, including conjugation, integrative mobile elements, and bacteriophages. Overall, this study provides a genomic framework for future experimental and metagenomic investigations into the role of OMV-associated processes in antimicrobial resistance dissemination and should be interpreted as a recently identified evolutionary strategy inferred from genomic data, rather than a novel or experimentally validated mechanism.

International Journal of Molecular SciencesVol. 27(2)
Universidad Autónoma de Coahuila (MX), Universidad Autónoma del Carmen (MX), Hospital Juárez de México (MX), Instituto Politécnico Nacional (MX)
Good health and well-being
Openalex Percentile: Top 82%
Bacterial Infections and Vaccines
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