Genetic diversity analysis of Solanum accessions from Czech collections of potato genetic resources using nuclear SSR markers

The genus <i>Solanum</i> comprises numerous wild and cultivated species that are important for potato breeding. This pilot-scale study aimed to evaluate the genetic diversity in 44 accessions from <i>Solanum</i> sect. Petota, comprising wild species, Andean landraces, and modern cultivars, obtained from the Potato Research Institute Havlkv Brod, Ltd. and the Department of Crop Sciences and Agroforestry at the Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague. Nuclear microsatellite markers (SSR, 29 loci) were applied via five multiplex PCR reactions and analysed using capillary electrophoresis. Binary data matrices were analysed using DARwin software to generate dendrograms reflecting allelic polymorphism. The SSR panel effectively differentiated cultivated accessions from wild types, consistent with the current taxonomy of the genus <i>Solanum</i>, with particularly clear clustering of Andean landraces and modern varieties. However, resolution among wild accessions was limited, likely due to their high genetic complexity and interspecific overlap. These results support the suitability of the SSR panel for analysing diversity in cultivated potatoes. while also highlighting the challenges in resolving wild <i>Solanum</i> taxa. This study contributes to germplasm characterisation and provides a molecular basis for future breeding programmes.