Dissolved organic matter dynamics and chemistry under fungal activity: A microcosm incubation with litter differentially 13C-labelled

• Trichoderma harzianum mainly consumes DOC during the first weeks of decomposition. • Residual DOC is depleted in carbohydrates, enriched in lipids and lignin moieties are oxidised. • Typical fungal component did not substantially accumulate in DOC. • Abiotic processes release substantial amount of DOC. This work aimed at better documenting the effects of fungal activity on dissolved organic matter (OM) in soils. Dynamics of water-extractable OM (as surrogate for dissolved OM) quantity and chemical quality was monitored during a ca. 6 month microcosm incubation of plant residues in the presence of fungi. Differential 13 C-labelling of metabolites vs structural compounds of the incubated residues further allowed clarifying the balance between fungal mineralisation and production of soluble compounds (through biosynthesis and/or decomposition). The fungus Trichoderma harzianum was mainly active during the first weeks of incubation, substantially mineralizing WEOM, preferentially consuming carbohydrates. The fungus induced chemical modification of WEOM, notably selective preservation of lipids and oxidation of lignin moieties. While T. harzianum probably degraded some insoluble structural molecules and produced biomass, these contributions to bulk WEOM appeared minor (when compared with leaching and mineralization), either because non-significant or entering non-extractable carbon pool. Additionally, characterization of control fungus-free microcosms, highlighted the potential role of abiotic processes on WEOM production, including leaching and depolymerisation by extracellular enzymes, notably of carbohydrate rich (insoluble) macromolecules.

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Publication Details

Journal
Geoderma
Published
2026-01-20
DOI
https://doi.org/10.1016/j.geoderma.2025.117670
Primary Topic
Soil Carbon and Nitrogen Dynamics
Type
article
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article

Dissolved organic matter dynamics and chemistry under fungal activity: A microcosm incubation with litter differentially 13C-labelled

Thanh Thuy Nguyen Tu, Mercedes Mendez‐Millan, Frédéric Delarue, Sylvie Collin et al.
Geoderma
Soil Carbon and Nitrogen Dynamics
article

Dissolved organic matter dynamics and chemistry under fungal activity: A microcosm incubation with litter differentially 13C-labelled

Thanh Thuy Nguyen Tu, Mercedes Mendez‐Millan, Frédéric Delarue, Sylvie Collin, Rania Krimou, Christelle Anquetil, Caroline Kunz, Marie Alexis, Marion Texier, Philippe Biron, Joëlle Dupont, Emmanuel Aubry
article en

Abstract

• Trichoderma harzianum mainly consumes DOC during the first weeks of decomposition. • Residual DOC is depleted in carbohydrates, enriched in lipids and lignin moieties are oxidised. • Typical fungal component did not substantially accumulate in DOC. • Abiotic processes release substantial amount of DOC. This work aimed at better documenting the effects of fungal activity on dissolved organic matter (OM) in soils. Dynamics of water-extractable OM (as surrogate for dissolved OM) quantity and chemical quality was monitored during a ca. 6 month microcosm incubation of plant residues in the presence of fungi. Differential 13 C-labelling of metabolites vs structural compounds of the incubated residues further allowed clarifying the balance between fungal mineralisation and production of soluble compounds (through biosynthesis and/or decomposition). The fungus Trichoderma harzianum was mainly active during the first weeks of incubation, substantially mineralizing WEOM, preferentially consuming carbohydrates. The fungus induced chemical modification of WEOM, notably selective preservation of lipids and oxidation of lignin moieties. While T. harzianum probably degraded some insoluble structural molecules and produced biomass, these contributions to bulk WEOM appeared minor (when compared with leaching and mineralization), either because non-significant or entering non-extractable carbon pool. Additionally, characterization of control fungus-free microcosms, highlighted the potential role of abiotic processes on WEOM production, including leaching and depolymerisation by extracellular enzymes, notably of carbohydrate rich (insoluble) macromolecules.

GeodermaVol. 466
Centre National de la Recherche Scientifique (FR), École Pratique des Hautes Études (FR), Université Paris-Est Créteil (FR), Université Paris Cité (FR), Sorbonne Université (FR), Sorbonne Paris Cité (FR), Institut de Systématique, Évolution, Biodiversité (FR), Milieux environnementaux, transferts et interactions dans les hydrosystèmes et les sols (FR), Institut d'écologie et des sciences de l'environnement de Paris (FR), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (FR), Institut de Recherche pour le Développement (FR), Structure et Instabilité des Génomes (FR), Université Paris 1 Panthéon-Sorbonne (FR)
Openalex Percentile: Top 83%
Soil Carbon and Nitrogen Dynamics
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