Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal

The quantification and identification of components in archaeological micromorphology remain subjective and challenging, particularly for early-career researchers. To address this, we developed a deep learning tool for the automatic segmentation of three materials commonly found in Palaeolithic contexts and thin sections: bone, charcoal, and lithic fine-grained debitage (flint and obsidian). Using high-resolution photomicrographs of 57 thin sections in plane-polarised and cross-polarised light, we trained and evaluated state-of-the-art convolutional neural networks (CNNs) for material segmentation. The best-performing configuration, a U-Net with an InceptionV4 encoder, achieved mean intersection over union (IoU) scores of 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal. The models also classified the relative abundance of each material with balanced accuracies of 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal. These results demonstrate the potential of deep learning to enhance objectivity, accuracy, and reproducibility in archaeological micromorphology, providing a valuable resource for future geoarchaeological research.

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Journal
PLoS ONE
Published
2026-01-20
DOI
https://doi.org/10.1371/journal.pone.0340353
Primary Topic
Pleistocene-Era Hominins and Archaeology
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article
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article

Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal

Javier Hernández‐Aceituno, Rafael Arnay, Sara Rueda-Saiz, Carolina Mallol et al.
PLoS ONE
Pleistocene-Era Hominins and Archaeology
article

Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal

Javier Hernández‐Aceituno, Rafael Arnay, Sara Rueda-Saiz, Carolina Mallol, Pedro García-Villa
article en

Abstract

The quantification and identification of components in archaeological micromorphology remain subjective and challenging, particularly for early-career researchers. To address this, we developed a deep learning tool for the automatic segmentation of three materials commonly found in Palaeolithic contexts and thin sections: bone, charcoal, and lithic fine-grained debitage (flint and obsidian). Using high-resolution photomicrographs of 57 thin sections in plane-polarised and cross-polarised light, we trained and evaluated state-of-the-art convolutional neural networks (CNNs) for material segmentation. The best-performing configuration, a U-Net with an InceptionV4 encoder, achieved mean intersection over union (IoU) scores of 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal. The models also classified the relative abundance of each material with balanced accuracies of 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal. These results demonstrate the potential of deep learning to enhance objectivity, accuracy, and reproducibility in archaeological micromorphology, providing a valuable resource for future geoarchaeological research.

PLoS ONEVol. 21(1)
Universidad de La Laguna (ES)
Openalex Percentile: Top 86%
Pleistocene-Era Hominins and Archaeology
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