Quantifying distributions of cryo-EM projections

In cryo-electron microscopy, a set of two-dimensional projections collected from different viewing directions may complicate image processing and subsequent model building if the distribution of these views is non-uniform. View distributions are traditionally represented as color-coded two-dimensional diagrams. However, such diagrams can introduce distortions and are cumbersome to manipulate, store and compare across data sets; they do not provide a commonly accepted quantitative measure of uniformity. In this work, we propose a method to characterize these angular distributions quantitatively and to represent them as simple one-dimensional curves rather than two-dimensional colored diagrams. The suggested measures could be incorporated into databases such as EMDB to provide a compact, standardized description of the angular distribution of particle views.

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Publication Details

Journal
Acta Crystallographica Section D Structural Biology
Published
2026-01-07
DOI
https://doi.org/10.1107/s2059798325011611
Primary Topic
Advanced Electron Microscopy Techniques and Applications
Type
article
Field-Weighted Citation Impact
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article

Quantifying distributions of cryo-EM projections

Alexandre Urzhumtsev
Acta Crystallographica Section D Structural Biology
Advanced Electron Microscopy Techniques and Applications
article

Quantifying distributions of cryo-EM projections

Alexandre Urzhumtsev
article en

Abstract

In cryo-electron microscopy, a set of two-dimensional projections collected from different viewing directions may complicate image processing and subsequent model building if the distribution of these views is non-uniform. View distributions are traditionally represented as color-coded two-dimensional diagrams. However, such diagrams can introduce distortions and are cumbersome to manipulate, store and compare across data sets; they do not provide a commonly accepted quantitative measure of uniformity. In this work, we propose a method to characterize these angular distributions quantitatively and to represent them as simple one-dimensional curves rather than two-dimensional colored diagrams. The suggested measures could be incorporated into databases such as EMDB to provide a compact, standardized description of the angular distribution of particle views.

Acta Crystallographica Section D Structural BiologyVol. 82(2)
Centre National de la Recherche Scientifique (FR), Inserm (FR), Institut de génétique et de biologie moléculaire et cellulaire (FR)
Openalex Percentile: Top 87%
Advanced Electron Microscopy Techniques and Applications
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Quantifying distributions of cryo-EM projections — Alexandre Urzhumtsev · Acta Crystallographica Section D Structural Biology (2026) | TGRS Research Map | TGRS