Hydrodynamic dispersion drives viral-cellular contact for gene delivery in porous media

Reactive biological processes often hinge on rare collisions between particles that occupy vastly different physical regimes, yet the transport physics that govern these encounters remain poorly understood. Biological cell-virus encounters offer a uniquely quantifiable instance of this general problem: collisions between particles whose transport is governed by entirely different physical mechanisms, yet whose interactions determine system-level function. In stagnant liquids, nanoscale viral vectors explore space only through slow Brownian diffusion, while microscale cells rapidly sediment, producing species separation that suppresses the virus-cell interaction interface. Here we show that liquid absorption into a dry, macroporous sponge enhances viral-cellular interactions by shifting the system into an advection-dispersion regime that circumvents this sedimentation-diffusion limit. By integrating experimental results with a multiscale simulation model, we demonstrate that the tortuous sponge porosity converts capillary-driven flow into convective mixing, driving orders-of-magnitude increases in viral-cellular collision rates. Coupling these dispersive transport dynamics with a probabilistic capture model reveals that hydrodynamic dispersion accounts for the multifold enhancement in viral-cellular transduction efficiency observed in porous sponges. These results provide a quantitative framework for emergent collision dynamics in complex porous media and establish a generalizable strategy to optimize active transport in spatiotemporally heterogeneous biological systems.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-16
DOI
https://doi.org/10.64898/2026.01.15.699726
Primary Topic
Bacteriophages and microbial interactions
Type
article
Field-Weighted Citation Impact
0.00

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article

Hydrodynamic dispersion drives viral-cellular contact for gene delivery in porous media

Vishal Srikanth, Micah Mallory, Andrew J. Ulmer, Yevgeny Brudno et al.
bioRxiv (Cold Spring Harbor Laboratory)
Bacteriophages and microbial interactions
article

Hydrodynamic dispersion drives viral-cellular contact for gene delivery in porous media

Vishal Srikanth, Micah Mallory, Andrew J. Ulmer, Yevgeny Brudno, Andrey V Kuznetsov, Wesley R Legant
article en

Abstract

Reactive biological processes often hinge on rare collisions between particles that occupy vastly different physical regimes, yet the transport physics that govern these encounters remain poorly understood. Biological cell-virus encounters offer a uniquely quantifiable instance of this general problem: collisions between particles whose transport is governed by entirely different physical mechanisms, yet whose interactions determine system-level function. In stagnant liquids, nanoscale viral vectors explore space only through slow Brownian diffusion, while microscale cells rapidly sediment, producing species separation that suppresses the virus-cell interaction interface. Here we show that liquid absorption into a dry, macroporous sponge enhances viral-cellular interactions by shifting the system into an advection-dispersion regime that circumvents this sedimentation-diffusion limit. By integrating experimental results with a multiscale simulation model, we demonstrate that the tortuous sponge porosity converts capillary-driven flow into convective mixing, driving orders-of-magnitude increases in viral-cellular collision rates. Coupling these dispersive transport dynamics with a probabilistic capture model reveals that hydrodynamic dispersion accounts for the multifold enhancement in viral-cellular transduction efficiency observed in porous sponges. These results provide a quantitative framework for emergent collision dynamics in complex porous media and establish a generalizable strategy to optimize active transport in spatiotemporally heterogeneous biological systems.

bioRxiv (Cold Spring Harbor Laboratory)
University of North Carolina at Chapel Hill (US), North Carolina State University (US)
National Science Foundation, North Carolina State University, National Institutes of Health, University of North Carolina at Chapel Hill, Division of Electrical, Communications and Cyber Systems, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
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Openalex Percentile: Top 88%
Bacteriophages and microbial interactions
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