Modeling neutrophilic iron-oxidizing bacteria: a KBase narrative resource describing newly integrated metabolic reactions
We present a KBase tutorial narrative demonstrating construction of stoichiometric metabolic models of iron-oxidizing bacteria. The tutorial describes an extended ModelSEED2 framework, which includes support for iron oxidation. These capabilities complement omics analyses by enabling predictions of physiological dynamics, metabolic fluxes, and the role of iron oxidation in environmental systems.
Authors
- Christopher S. Henry (ORCID: https://orcid.org/0000-0001-8058-9123)
- Filipe Liu (ORCID: https://orcid.org/0000-0001-8701-2984)
- José P. Faria (ORCID: https://orcid.org/0000-0001-9302-7250)
- Gracee K. Tothero (ORCID: https://orcid.org/0000-0001-7792-3880)
- Clara S. Chan
Institutions
- Argonne National Laboratory (US)
- Biotechnology Institute (US)
- University of Delaware (US)
Publication Details
- Journal
- Microbiology Resource Announcements
- Published
- 2026-01-16
- DOI
- https://doi.org/10.1128/mra.00381-25
- Primary Topic
- Microbial Fuel Cells and Bioremediation
- Type
- article
- Field-Weighted Citation Impact
- 0.00