The first whole-genome sequence of a prospective novel sponge-associated Streptomyces strain from Indonesia with a long 1.5 Mbp terminal inverted repeat

<ns3:p> <ns3:italic>Streptomyces</ns3:italic> sp. BTA 1-131 was isolated from the marine sponge <ns3:italic>Melophlus sarasinorum</ns3:italic> collected in Indonesia. The crude extracts of this strain displayed antibacterial and cytotoxic activity, and therefore, to further investigate the bioactive potential of the strain, whole genome sequencing was performed in this study. The whole genome sequencing of <ns3:italic>Streptomyces</ns3:italic> sp. BTA 1-131 was conducted using both Illumina NextSeq and Oxford Nanopore platforms with a de novo hybrid assembly approach. The high-quality genome obtained is 10.23 Mbp with a GC content of 71.57%. It is organised into a single chromosomal contig, two linear plasmids, and one circular plasmid. Interestingly, a long-terminal inverted repeat (L-TIR) sequence of 1.5 Mbp has been confirmed in the strain genome. Phylogenomic analysis suggested that the strain BTA 1-131 likely represents a new species within the genus <ns3:italic>Streptomyces.</ns3:italic> To the best of our knowledge, the genome data described here would be the first report on the hybrid genome sequence of <ns3:italic>Streptomyces</ns3:italic> associated with the rarely reported sponge <ns3:italic>Melophlus sarasinorum</ns3:italic> from Indonesia, with a unique feature of L-TIR. The complete genome data generated here will provide compelling information for further analysis of the biosynthetic potential of the strain BTA 1-131 to produce new bioactive compounds. </ns3:p>

Authors

Publication Details

Journal
F1000Research
Published
2026-01-16
DOI
https://doi.org/10.12688/f1000research.173356.2
Primary Topic
Microbial Natural Products and Biosynthesis
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

The first whole-genome sequence of a prospective novel sponge-associated Streptomyces strain from Indonesia with a long 1.5 Mbp terminal inverted repeat

Shanti Ratnakomala, Akhirta Atikana, Linda Sukmarini, Puspita Lisdiyanti Puspita Lisdiyanti et al.
F1000Research
Microbial Natural Products and Biosynthesis
article

The first whole-genome sequence of a prospective novel sponge-associated Streptomyces strain from Indonesia with a long 1.5 Mbp terminal inverted repeat

Shanti Ratnakomala, Akhirta Atikana, Linda Sukmarini, Puspita Lisdiyanti Puspita Lisdiyanti, Rahadian Pratama, Fahrurrozi Fahrurrozi
article en

Abstract

<ns3:p> <ns3:italic>Streptomyces</ns3:italic> sp. BTA 1-131 was isolated from the marine sponge <ns3:italic>Melophlus sarasinorum</ns3:italic> collected in Indonesia. The crude extracts of this strain displayed antibacterial and cytotoxic activity, and therefore, to further investigate the bioactive potential of the strain, whole genome sequencing was performed in this study. The whole genome sequencing of <ns3:italic>Streptomyces</ns3:italic> sp. BTA 1-131 was conducted using both Illumina NextSeq and Oxford Nanopore platforms with a de novo hybrid assembly approach. The high-quality genome obtained is 10.23 Mbp with a GC content of 71.57%. It is organised into a single chromosomal contig, two linear plasmids, and one circular plasmid. Interestingly, a long-terminal inverted repeat (L-TIR) sequence of 1.5 Mbp has been confirmed in the strain genome. Phylogenomic analysis suggested that the strain BTA 1-131 likely represents a new species within the genus <ns3:italic>Streptomyces.</ns3:italic> To the best of our knowledge, the genome data described here would be the first report on the hybrid genome sequence of <ns3:italic>Streptomyces</ns3:italic> associated with the rarely reported sponge <ns3:italic>Melophlus sarasinorum</ns3:italic> from Indonesia, with a unique feature of L-TIR. The complete genome data generated here will provide compelling information for further analysis of the biosynthetic potential of the strain BTA 1-131 to produce new bioactive compounds. </ns3:p>

F1000ResearchVol. 14
Life below water
Openalex Percentile: Top 84%
Microbial Natural Products and Biosynthesis
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.