Uncertainty quantification using Hamiltonian Monte Carlo for structural geological modelling with implicit neural representations (INR)

Three-dimensional geological modelling is an essential tool for understanding subsurface features, supporting advanced exploration of natural resources, their sustainable development, and the identification of optimal locations for carbon storage. Recently, efficient neural network approaches have been developed to handle large datasets and to integrate diverse observations and prior knowledge into geological models. Previous work has demonstrated that neural networks are powerful tools for geological modelling, but quantifying uncertainty in their predictions remains an open issue. In this work, we address the uncertainty arising from both network parameters and observational data. We explore the full space of possible geological model realizations using a Hamiltonian Monte Carlo sampler, and quantify the uncertainty of predicted geological interfaces within a Bayesian neural network framework. Our experimental results demonstrate that the Hamiltonian Monte Carlo sampler effectively explores the posterior distribution in function space and quantifies the uncertainty of predicted geological interfaces for both a noise-free borehole dataset from the North Sea and a noisy dataset interpreted from geophysical well logs in Saskatchewan, Canada. We also apply the method to a simple faulting scenario involving a normal fault in flat stratigraphy. Furthermore, in comparison with the commonly used Monte Carlo dropout approach, the Hamiltonian Monte Carlo sampler exhibits superior accuracy in assessing epistemic uncertainty in a noise-free dataset. However, computational efficiency remains a potential challenge in large dataset and network. • Integrate a Hamiltonian Monte Carlo sampler into an INR geomodelling framework. • Quantify the uncertainty arising from both network parameters and observational data. • Explore the full space of possible geological interfaces in both noise-free and noisy datasets. • Conduct a comparative study with the commonly used Monte Carlo dropout approach.

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Publication Details

Journal
Computers & Geosciences
Published
2026-01-15
DOI
https://doi.org/10.1016/j.cageo.2026.106123
Primary Topic
Geological Modeling and Analysis
Type
article
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article

Uncertainty quantification using Hamiltonian Monte Carlo for structural geological modelling with implicit neural representations (INR)

Kaifeng Gao, Michael Hillier
Computers & Geosciences
Geological Modeling and Analysis
article

Uncertainty quantification using Hamiltonian Monte Carlo for structural geological modelling with implicit neural representations (INR)

Kaifeng Gao, Michael Hillier
article en

Abstract

Three-dimensional geological modelling is an essential tool for understanding subsurface features, supporting advanced exploration of natural resources, their sustainable development, and the identification of optimal locations for carbon storage. Recently, efficient neural network approaches have been developed to handle large datasets and to integrate diverse observations and prior knowledge into geological models. Previous work has demonstrated that neural networks are powerful tools for geological modelling, but quantifying uncertainty in their predictions remains an open issue. In this work, we address the uncertainty arising from both network parameters and observational data. We explore the full space of possible geological model realizations using a Hamiltonian Monte Carlo sampler, and quantify the uncertainty of predicted geological interfaces within a Bayesian neural network framework. Our experimental results demonstrate that the Hamiltonian Monte Carlo sampler effectively explores the posterior distribution in function space and quantifies the uncertainty of predicted geological interfaces for both a noise-free borehole dataset from the North Sea and a noisy dataset interpreted from geophysical well logs in Saskatchewan, Canada. We also apply the method to a simple faulting scenario involving a normal fault in flat stratigraphy. Furthermore, in comparison with the commonly used Monte Carlo dropout approach, the Hamiltonian Monte Carlo sampler exhibits superior accuracy in assessing epistemic uncertainty in a noise-free dataset. However, computational efficiency remains a potential challenge in large dataset and network. • Integrate a Hamiltonian Monte Carlo sampler into an INR geomodelling framework. • Quantify the uncertainty arising from both network parameters and observational data. • Explore the full space of possible geological interfaces in both noise-free and noisy datasets. • Conduct a comparative study with the commonly used Monte Carlo dropout approach.

Computers & GeosciencesVol. 209
Natural Resources Canada (CA), Geological Survey of Canada (CA), Fraunhofer Research Institution for Energy Infrastructures and Geotechnologies IEG (DE), RWTH Aachen University (DE)
Industry, innovation and infrastructure
Openalex Percentile: Top 89%
Geological Modeling and Analysis
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