Soil–Plant Microbial Interactions and Their Effects on Silage Quality and Mycotoxin Risk in Lodged Oats

This study explored the patterns and mechanisms influencing changes in silage quality, mycotoxin accumulation, and microbial community structure in oat silage after lodging. Upright oat forage (control, CK), lodging oat forage (upper layer (UL), lower layer (LL), and mixed layers (MLs) were harvested at 0, 7, 25, and 45 days after lodging and ensiled for 60 days. The results showed that the dry matter (DM) and water-soluble carbohydrate (WSC) content decreased significantly (p < 0.05), whereas crude protein (CP) and fiber content increased significantly compared to upright oats (p < 0.05). The WSC and CP content in silage decreased with increasing lodging duration. The fiber content increased in late harvest after lodging. The risk of mycotoxin infection increased after lodging, with aflatoxin levels exceeding EU limits. The mycotoxins in UL silage were the lowest when lodging lasted for seven days. Lodging oat silage was dominated by Lactobacillus, and the Pseudomonas in the lodging group was less than 4%. The fungi in lodging oat silage was lower, and the UL (upper layer) treatment was the lowest when lodging for 7 days. Overall, the transfer of microorganisms, especially Plectosphaerella, Fusarium, Alternaria, Cladosporium, and Botryotrichum, from soil to silage following oat collapse is of interest. The results suggest the soil–plant microbial interactions and their effects on silage fermentation and mycotoxins in lodging oats.