Microbiota-induced T cell plasticity enables immune-mediated tumour control

Therapies that harness the immune system to target and eliminate tumour cells have revolutionized cancer care. Immune checkpoint blockade (ICB), which boosts the anti-tumour immune response by inhibiting negative regulators of T cell activation<sup>1-3</sup>, is remarkably successful in a subset of cancer patients. Yet a significant proportion do not respond to treatment, emphasizing the need to understand factors influencing the therapeutic efficacy of ICB<sup>4-9</sup>. The gut microbiota, consisting of trillions of microorganisms residing in the gastrointestinal tract, has emerged as a critical determinant of immune function and response to cancer immunotherapy, with several studies demonstrating association of microbiota composition with clinical response<sup>10-16</sup>. However, a mechanistic understanding of how gut commensal bacteria influence the efficacy of ICB remains elusive. Here we use a gut commensal microorganism, segmented filamentous bacteria (SFB), which induces an antigen-specific T helper 17 (T<sub>H</sub>17) cell effector program in the small intestine lamina propria (SILP)<sup>17</sup>, to investigate how colonization with this microbe affects the efficacy of ICB in restraining distal growth of tumours sharing antigen with SFB. We find that anti-programmed cell death protein 1 (PD-1) treatment effectively inhibits the growth of implanted SFB antigen-expressing melanoma only if mice are colonized with SFB. Through T cell receptor (TCR) clonal lineage tracing, fate mapping and peptide-major histocompatability complex (MHC) tetramer staining, we identify tumour-associated SFB-specific T helper 1 (T<sub>H</sub>1)-like cells derived from the homeostatic T<sub>H</sub>17 cells induced by SFB colonization in the SILP. These gut-educated ex-T<sub>H</sub>17 cells produce high levels of the pro-inflammatory cytokines interferon (IFN)-γ and tumour necrosis factor (TNF) within the tumour microenvironment (TME), enhancing antigen presentation and promoting recruitment, expansion and effector functions of CD8<sup>+</sup> tumour-infiltrating cytotoxic lymphocytes and thereby enabling anti-PD-1-mediated tumour control. Conditional ablation of SFB-induced IL-17A<sup>+</sup>CD4<sup>+</sup> T cells, precursors of tumour-associated T<sub>H</sub>1-like cells, abolishes anti-PD-1-mediated tumour control and markedly impairs tumour-specific CD8<sup>+</sup> T cell recruitment and effector function within the TME. Our data, as a proof of principle, define a cellular pathway by which a single, defined intestinal commensal imprints T cell plasticity that potentiates PD-1 blockade, and indicate targeted modulation of the microbiota as a strategy to broaden ICB efficacy.

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Journal
Nature
Published
2026-01-14
DOI
https://doi.org/10.1038/s41586-025-09913-z
Citations
2
Primary Topic
Cancer Research and Treatments
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article
Field-Weighted Citation Impact
55.91
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article

Microbiota-induced T cell plasticity enables immune-mediated tumour control

Yuhan Hao, Tariq Ahmad Najar, Alexandra Dolynuk, Yuan Hao et al.
2 citations
Nature
Cancer Research and Treatments
55.91
article

Microbiota-induced T cell plasticity enables immune-mediated tumour control

Yuhan Hao, Tariq Ahmad Najar, Alexandra Dolynuk, Yuan Hao, Gabriela Romero-Meza, Emma Almo
article en
2 citations

Abstract

Therapies that harness the immune system to target and eliminate tumour cells have revolutionized cancer care. Immune checkpoint blockade (ICB), which boosts the anti-tumour immune response by inhibiting negative regulators of T cell activation<sup>1-3</sup>, is remarkably successful in a subset of cancer patients. Yet a significant proportion do not respond to treatment, emphasizing the need to understand factors influencing the therapeutic efficacy of ICB<sup>4-9</sup>. The gut microbiota, consisting of trillions of microorganisms residing in the gastrointestinal tract, has emerged as a critical determinant of immune function and response to cancer immunotherapy, with several studies demonstrating association of microbiota composition with clinical response<sup>10-16</sup>. However, a mechanistic understanding of how gut commensal bacteria influence the efficacy of ICB remains elusive. Here we use a gut commensal microorganism, segmented filamentous bacteria (SFB), which induces an antigen-specific T helper 17 (T<sub>H</sub>17) cell effector program in the small intestine lamina propria (SILP)<sup>17</sup>, to investigate how colonization with this microbe affects the efficacy of ICB in restraining distal growth of tumours sharing antigen with SFB. We find that anti-programmed cell death protein 1 (PD-1) treatment effectively inhibits the growth of implanted SFB antigen-expressing melanoma only if mice are colonized with SFB. Through T cell receptor (TCR) clonal lineage tracing, fate mapping and peptide-major histocompatability complex (MHC) tetramer staining, we identify tumour-associated SFB-specific T helper 1 (T<sub>H</sub>1)-like cells derived from the homeostatic T<sub>H</sub>17 cells induced by SFB colonization in the SILP. These gut-educated ex-T<sub>H</sub>17 cells produce high levels of the pro-inflammatory cytokines interferon (IFN)-γ and tumour necrosis factor (TNF) within the tumour microenvironment (TME), enhancing antigen presentation and promoting recruitment, expansion and effector functions of CD8<sup>+</sup> tumour-infiltrating cytotoxic lymphocytes and thereby enabling anti-PD-1-mediated tumour control. Conditional ablation of SFB-induced IL-17A<sup>+</sup>CD4<sup>+</sup> T cells, precursors of tumour-associated T<sub>H</sub>1-like cells, abolishes anti-PD-1-mediated tumour control and markedly impairs tumour-specific CD8<sup>+</sup> T cell recruitment and effector function within the TME. Our data, as a proof of principle, define a cellular pathway by which a single, defined intestinal commensal imprints T cell plasticity that potentiates PD-1 blockade, and indicate targeted modulation of the microbiota as a strategy to broaden ICB efficacy.

NatureVol. 651(8104)
Howard Hughes Medical Institute (US), NYU Langone Health (US), New York Genome Center (US), New York University (US)
Good health and well-being
Openalex Percentile: Top 0%
Cancer Research and Treatments
55.91
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