Clinically validated dataset of 435 human colons segmented from CT colonography

High-quality segmentation datasets are essential for advancing AI applications in medical imaging. However, it is challenging to generate such datasets for highly variable and complex organs like the colon. We introduce a dataset of 435 human colons, segmented from Computed Tomography Colonography (CTC) obtained from the publicly available The Cancer Imaging Archive (TCIA). Each scan includes a mask of the whole colon, including collapsed segments and the fluid, and a mask of only the gas-filled parts of the colon. The colon segmentation accuracy has been clinically validated by an expert abdominal radiologist. This is the first open-access dataset of segmented colons derived from CTC. This resource enables population-scale radiologic studies, supports the development of AI-based image analysis tools, and facilitates the creation of anatomically accurate digital models and simulators, both virtual and physical.

Authors

Institutions

Publication Details

Journal
Scientific Data
Published
2026-01-14
DOI
https://doi.org/10.1038/s41597-025-06518-z
Primary Topic
Colorectal Cancer Screening and Detection
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Clinically validated dataset of 435 human colons segmented from CT colonography

Abraham George Smith, Kristoffer Mazanti Cold, Martina Finocchiaro, Melanie Ganz et al.
Scientific Data
Colorectal Cancer Screening and Detection
article

Clinically validated dataset of 435 human colons segmented from CT colonography

Abraham George Smith, Kristoffer Mazanti Cold, Martina Finocchiaro, Melanie Ganz, Jens Petersen, Ronja Stern, Lars Konge, Rikke Vilhelmsborg, Kenny Erleben
article en

Abstract

High-quality segmentation datasets are essential for advancing AI applications in medical imaging. However, it is challenging to generate such datasets for highly variable and complex organs like the colon. We introduce a dataset of 435 human colons, segmented from Computed Tomography Colonography (CTC) obtained from the publicly available The Cancer Imaging Archive (TCIA). Each scan includes a mask of the whole colon, including collapsed segments and the fluid, and a mask of only the gas-filled parts of the colon. The colon segmentation accuracy has been clinically validated by an expert abdominal radiologist. This is the first open-access dataset of segmented colons derived from CTC. This resource enables population-scale radiologic studies, supports the development of AI-based image analysis tools, and facilitates the creation of anatomically accurate digital models and simulators, both virtual and physical.

Scientific DataVol. 13(1)
University of Copenhagen (DK), Bispebjerg Hospital (DK), Copenhagen University Hospital (DK), Copenhagen Academy for Medical Education and Simulation (DK), Capital Region of Denmark (DK)
European Commission
Openalex Percentile: Top 87%
Colorectal Cancer Screening and Detection
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Clinically validated dataset of 435 human colons segmented from CT colonography — Abraham George Smith, Kristoffer Mazanti Cold, et al. · Scientific Data (2026) | TGRS Research Map | TGRS