Benchmarking Automated and Semi-Automated Vocal Clustering Methods

Analyzing large datasets of animal vocalizations requires efficient bioacoustic methods for categorizing the vocalization types. This study evaluates the effectiveness of different vocalization clustering methods, comparing fully automated and semi-automated methods against the gold standard of manual expert annotations. Effective methods achieve good clustering performance whilst minimizing human effort. We release a new dataset of 1454 zebra finch vocalizations manually clustered by experts, on which we evaluate (i) fully automated clustering using off-the-shelf methods based on sound embeddings and (ii) a semi-automated workflow relying on refining the embedding-derived clusters. Clustering performance is assessed using the Adjusted Rand Index (ARI) and Normalized Mutual Information (NMI). Results indicate that while fully automated methods provide a useful baseline, they generally fall short of human-level consistency. In contrast, the semi-automated workflow achieved agreement scores comparable to inter-expert reliability, approaching the levels of expert manual clustering. This demonstrates that refining embedding-derived clusters reduces annotation time while maintaining gold standard accuracy. We conclude that semi-automated workflows offer an optimal strategy for bioacoustics, enabling the scalable analysis of large datasets without compromising the precision required for robust behavioral insights.

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Publication Details

Journal
Applied Sciences
Published
2026-01-13
DOI
https://doi.org/10.3390/app16020810
Primary Topic
Animal Vocal Communication and Behavior
Type
article
Field-Weighted Citation Impact
0.00

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article

Benchmarking Automated and Semi-Automated Vocal Clustering Methods

Anja T. Zai, Maris Basha, Kanghwi Lee, Richard H. R. Hahnloser
Applied Sciences
Animal Vocal Communication and Behavior
article

Benchmarking Automated and Semi-Automated Vocal Clustering Methods

Anja T. Zai, Maris Basha, Kanghwi Lee, Richard H. R. Hahnloser
article en

Abstract

Analyzing large datasets of animal vocalizations requires efficient bioacoustic methods for categorizing the vocalization types. This study evaluates the effectiveness of different vocalization clustering methods, comparing fully automated and semi-automated methods against the gold standard of manual expert annotations. Effective methods achieve good clustering performance whilst minimizing human effort. We release a new dataset of 1454 zebra finch vocalizations manually clustered by experts, on which we evaluate (i) fully automated clustering using off-the-shelf methods based on sound embeddings and (ii) a semi-automated workflow relying on refining the embedding-derived clusters. Clustering performance is assessed using the Adjusted Rand Index (ARI) and Normalized Mutual Information (NMI). Results indicate that while fully automated methods provide a useful baseline, they generally fall short of human-level consistency. In contrast, the semi-automated workflow achieved agreement scores comparable to inter-expert reliability, approaching the levels of expert manual clustering. This demonstrates that refining embedding-derived clusters reduces annotation time while maintaining gold standard accuracy. We conclude that semi-automated workflows offer an optimal strategy for bioacoustics, enabling the scalable analysis of large datasets without compromising the precision required for robust behavioral insights.

Applied SciencesVol. 16(2)
University of Zurich (CH), ETH Zurich (CH)
National Science Foundation, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
Openalex Percentile: Top 90%
Animal Vocal Communication and Behavior
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