G2P Datasets: A Hub for Genomic Datasets for Predictive Modeling in Plants and Animals

We present G2P Datasets, a novel, open-access repository of publicly available genomic datasets for plants and animals. G2P Datasets currently hosts more than 100 public genomic datasets, meticulously compiled from diverse publications. The repository hosts meta-data (including digital object identifier for the hosted datasets) and scripts that can be used to download and read each dataset hosted into an R-environment. Scientists can submit new datasets by completing an online form. Additionally, many of the curated datasets are accessible through Kaggle and through links that allow rapid download of formatted R-objects. A searchable database of meta-data allows users to search through datasets for more than 60 species of plants and animals in a variety of traits and sample sizes. The repository is accessible via a web app interface with a catalog and clear instructions to contribute by adding new datasets and through GitHub. By unifying genomic and phenotypic meta-data into a navigable platform, we aim to facilitate genome-to-phenotype research in plant and animal genetics. This article provides an overview of the repository's content, organization, and utility.

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Publication Details

Journal
G3 Genes Genomes Genetics
Published
2026-01-13
DOI
https://doi.org/10.1093/g3journal/jkag001
Primary Topic
Genetic Mapping and Diversity in Plants and Animals
Type
article
Field-Weighted Citation Impact
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article

G2P Datasets: A Hub for Genomic Datasets for Predictive Modeling in Plants and Animals

Juan Pedro Steibel, G. de los Campos, Hao Cheng, Yunxuan Deng et al.
G3 Genes Genomes Genetics
Genetic Mapping and Diversity in Plants and Animals
article

G2P Datasets: A Hub for Genomic Datasets for Predictive Modeling in Plants and Animals

Juan Pedro Steibel, G. de los Campos, Hao Cheng, Yunxuan Deng, Fernando Aguate, Jack C M Dekkers, Harish Neelam
article en

Abstract

We present G2P Datasets, a novel, open-access repository of publicly available genomic datasets for plants and animals. G2P Datasets currently hosts more than 100 public genomic datasets, meticulously compiled from diverse publications. The repository hosts meta-data (including digital object identifier for the hosted datasets) and scripts that can be used to download and read each dataset hosted into an R-environment. Scientists can submit new datasets by completing an online form. Additionally, many of the curated datasets are accessible through Kaggle and through links that allow rapid download of formatted R-objects. A searchable database of meta-data allows users to search through datasets for more than 60 species of plants and animals in a variety of traits and sample sizes. The repository is accessible via a web app interface with a catalog and clear instructions to contribute by adding new datasets and through GitHub. By unifying genomic and phenotypic meta-data into a navigable platform, we aim to facilitate genome-to-phenotype research in plant and animal genetics. This article provides an overview of the repository's content, organization, and utility.

G3 Genes Genomes Genetics
Iowa State University (US), University of California, Davis (US), Michigan State University (US)
Openalex Percentile: Top 90%
Genetic Mapping and Diversity in Plants and Animals
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