Genome-Wide Identification of R2R3-MYB Gene Family in Strawberry (Fragaria vesca L.) and Functional Characterization of FvMYB103 in Cold Stress

<i>Fragaria vesca</i> L., a widely distributed model species, serves as a key resource for studying the evolution and genetics of the Fragaria genus. Research has shown that R2R3-MYB transcription factors are crucial for plant growth and development. However, their specific role in cold resistance in <i>F. vesca</i> is not well understood. In this study, we used the latest genome data for the strawberry (<i>F. vesca</i> v6.0). We performed a genome-wide identification of the R2R3-MYB gene family in <i>F. vesca</i>. We identified a total of 106 R2R3-FvMYBs. Based on their predicted functions in plants, we classified these genes into 25 distinct subfamilies. We then conducted a comprehensive bioinformatics analysis of this family. We performed a detailed examination of the R2R3-FvMYBs structures and physicochemical properties. This analysis provided five key parameters for each protein: molecular weight, the number of amino acids, theoretical isoelectric point, grand average of hydropathicity (GRAVY), and instability index. Gene duplication analysis suggested that segmental duplications were a primary driver of the proliferation of this gene family. Promoter cis-acting element prediction revealed that a large proportion of R2R3-FvMYBs possess elements predominantly associated with phytohormone responsiveness and biotic/abiotic stress responses. Quantitative real-time reverse transcription PCR (qRT-PCR) results confirmed that the expression levels of several R2R3-FvMYBs were upregulated under cold stress. Furthermore, compared to wild-type controls, the overexpression of <i>FvMYB103</i> in <i>Arabidopsis thaliana</i> enhanced cold tolerance, accompanied by increases in the relevant physiological indices. Collectively, these findings support further investigation into R2R3-MYB gene family to directly assess their contribution to cold resistance.

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Journal
International Journal of Molecular Sciences
Published
2026-01-13
DOI
https://doi.org/10.3390/ijms27020771
Primary Topic
Plant Gene Expression Analysis
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article
Field-Weighted Citation Impact
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article

Genome-Wide Identification of R2R3-MYB Gene Family in Strawberry (Fragaria vesca L.) and Functional Characterization of FvMYB103 in Cold Stress

Wanda Liu, Li X, Ziqi Chen, Fenghua Huang et al.
International Journal of Molecular Sciences
Plant Gene Expression Analysis
article

Genome-Wide Identification of R2R3-MYB Gene Family in Strawberry (Fragaria vesca L.) and Functional Characterization of FvMYB103 in Cold Stress

Wanda Liu, Li X, Ziqi Chen, Fenghua Huang, Deguo Han, Changjia Zhao, Wenhui Li, Yu Wang, Lihua Zhang
article en

Abstract

<i>Fragaria vesca</i> L., a widely distributed model species, serves as a key resource for studying the evolution and genetics of the Fragaria genus. Research has shown that R2R3-MYB transcription factors are crucial for plant growth and development. However, their specific role in cold resistance in <i>F. vesca</i> is not well understood. In this study, we used the latest genome data for the strawberry (<i>F. vesca</i> v6.0). We performed a genome-wide identification of the R2R3-MYB gene family in <i>F. vesca</i>. We identified a total of 106 R2R3-FvMYBs. Based on their predicted functions in plants, we classified these genes into 25 distinct subfamilies. We then conducted a comprehensive bioinformatics analysis of this family. We performed a detailed examination of the R2R3-FvMYBs structures and physicochemical properties. This analysis provided five key parameters for each protein: molecular weight, the number of amino acids, theoretical isoelectric point, grand average of hydropathicity (GRAVY), and instability index. Gene duplication analysis suggested that segmental duplications were a primary driver of the proliferation of this gene family. Promoter cis-acting element prediction revealed that a large proportion of R2R3-FvMYBs possess elements predominantly associated with phytohormone responsiveness and biotic/abiotic stress responses. Quantitative real-time reverse transcription PCR (qRT-PCR) results confirmed that the expression levels of several R2R3-FvMYBs were upregulated under cold stress. Furthermore, compared to wild-type controls, the overexpression of <i>FvMYB103</i> in <i>Arabidopsis thaliana</i> enhanced cold tolerance, accompanied by increases in the relevant physiological indices. Collectively, these findings support further investigation into R2R3-MYB gene family to directly assess their contribution to cold resistance.

International Journal of Molecular SciencesVol. 27(2)
Northeast Agricultural University (CN), Heilongjiang Provincial Academy of Agricultural Sciences (CN), Ministry of Agriculture and Rural Affairs (CN), Heilongjiang Academy of Agricultural Machinery Engineering (CN)
National Natural Science Foundation of China, China Postdoctoral Science Foundation, National Key Research and Development Program of China
Life in Land
Openalex Percentile: Top 90%
Plant Gene Expression Analysis
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