Limblab: pipeline for 3D analysis and visualisation of limb bud gene expression
The pipeline advances 3D gene expression analysis in limb development by integrating flexible tools for staging, alignment, and visualization. It is user-friendly, scalable to other samples, and optimized for research needs. Future updates will enhance customization and expand applicability to other species and developmental biology fields.
Authors
- Laura Aviñó-Esteban (ORCID: https://orcid.org/0000-0003-3847-8598)
- Marco Musy (ORCID: https://orcid.org/0000-0002-3364-8909)
- Giovanni Dalmasso (ORCID: https://orcid.org/0000-0002-8586-6027)
- Antoni Matyjaszkiewicz (ORCID: https://orcid.org/0000-0002-8647-5773)
- Heura Cardona-Blaya (ORCID: https://orcid.org/0000-0003-1766-6012)
- James Sharpe
Institutions
- Institució Catalana de Recerca i Estudis Avançats (ES)
- European Molecular Biology Laboratory (ES)
- Predictive Biology (United States) (US)
- Universitat Ramon Llull (ES)
- Universitat Politècnica de Catalunya (ES)
Publication Details
- Journal
- BMC Bioinformatics
- Published
- 2026-01-12
- DOI
- https://doi.org/10.1186/s12859-025-06264-4
- Primary Topic
- Congenital limb and hand anomalies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- European Molecular Biology Laboratory
- Ministerio de Ciencia, Innovación y Universidades