Chromosome organization by Structural Maintenance of Chromosomes complexes in C. elegans

Genome folding is a key regulator of transcription, chromosome segregation, and genome stability. In Caenorhabditis elegans, chromatin folding strategies have diverged from those observed in mammals or flies, resulting in the absence of visible topologically associating domains (TADs) on autosomes. Here, condensin I, rather than cohesin, serves as the primary long-range loop extruder, while distinct cohesin isoforms specialize in mitotic cohesion and loop extrusion, forming enhancer-associated 'fountains' that modulate neuronal gene expression. On the X chromosome, dosage compensation depends on the dosage compensation complex, which incorporates a specialized condensin I<sup>DC</sup> to establish TADs, regulate chromatin states, and repress transcription. These multilayered mechanisms illustrate the evolutionary versatility of 3D genome organization and its intimate links to development, physiology, and lifespan, positioning C. elegans as a powerful model for dissecting structural maintenance of chromosomes-mediated genome regulation.

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Publication Details

Journal
Current Opinion in Genetics & Development
Published
2026-01-12
DOI
https://doi.org/10.1016/j.gde.2025.102430
Primary Topic
Genomics and Chromatin Dynamics
Type
article
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article

Chromosome organization by Structural Maintenance of Chromosomes complexes in C. elegans

Sinem Erkan, Peter Meister, Kalyan Ghadage
Current Opinion in Genetics & Development
Genomics and Chromatin Dynamics
article

Chromosome organization by Structural Maintenance of Chromosomes complexes in C. elegans

Sinem Erkan, Peter Meister, Kalyan Ghadage
article en

Abstract

Genome folding is a key regulator of transcription, chromosome segregation, and genome stability. In Caenorhabditis elegans, chromatin folding strategies have diverged from those observed in mammals or flies, resulting in the absence of visible topologically associating domains (TADs) on autosomes. Here, condensin I, rather than cohesin, serves as the primary long-range loop extruder, while distinct cohesin isoforms specialize in mitotic cohesion and loop extrusion, forming enhancer-associated 'fountains' that modulate neuronal gene expression. On the X chromosome, dosage compensation depends on the dosage compensation complex, which incorporates a specialized condensin I<sup>DC</sup> to establish TADs, regulate chromatin states, and repress transcription. These multilayered mechanisms illustrate the evolutionary versatility of 3D genome organization and its intimate links to development, physiology, and lifespan, positioning C. elegans as a powerful model for dissecting structural maintenance of chromosomes-mediated genome regulation.

Current Opinion in Genetics & DevelopmentVol. 96
University of Bern (CH), Universidad Iberoamericana (DO)
Openalex Percentile: Top 91%
Genomics and Chromatin Dynamics
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Chromosome organization by Structural Maintenance of Chromosomes complexes in C. elegans — Sinem Erkan, Peter Meister, et al. · Current Opinion in Genetics & Development (2026) | TGRS Research Map | TGRS