Fish oocyte morphology detection using neural networks: a comparison of YOLO architectures: Uma comparação de arquiteturas YOLO

The recognition of oocytes, in their maturational stages, allow estimate the ovarian development and the type of spawning of a species. Although, distinguishing oocytes on histological images requires a visual and subjective interpretation by the specialist. With the development of deep learning techniques, automatic object detection has become an important mechanism for this task. However, studies that use deep learning techniques have not been widely explored for the analysis of fish oocyte samples so far. In this paper, we propose the use of YOLO, a family of convolutional neural networks, for oocyte morphology detection of Centropomus undecimalis fish. The research uses an image database with 5,680 oocytes with different maturation stadiums (PV - pre-vitellogenesis, VI - early vitellogenesis and VF - late vitellogenesis), in histological images, divided into training, testing and validation, and detection performed by YOLOv3, YOLOv4, and YOLOv5 architectures. The results obtained were promising, highlighting that the YOLOv5l model, in the detection of oocytes of the VF class, reached the best values in the metrics precision, recall, [email protected] and [email protected], with 85.4%, 95.3%, 95.7%, and 75.9%, respectively. When considering all classes, YOLOv5l was the model that obtained the best results in the analyzed metrics.

Authors

Institutions

Publication Details

Journal
LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
Published
2024-12-06
Primary Topic
Reproductive biology and impacts on aquatic species
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Fish oocyte morphology detection using neural networks: a comparison of YOLO architectures: Uma comparação de arquiteturas YOLO

José Ribamar de Souza Torres-Júnior, Antonio Fhillipi Maciel Silva, Ewaldo Eder Carvalho Santana, Raimunda Nonata Fortes Carvalho Neta et al.
LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
Reproductive biology and impacts on aquatic species
article

Fish oocyte morphology detection using neural networks: a comparison of YOLO architectures: Uma comparação de arquiteturas YOLO

José Ribamar de Souza Torres-Júnior, Antonio Fhillipi Maciel Silva, Ewaldo Eder Carvalho Santana, Raimunda Nonata Fortes Carvalho Neta, Yanna Leidy Ketley Fernandes Cruz, Isa Rosete Araujo Nascimento
article en

Abstract

The recognition of oocytes, in their maturational stages, allow estimate the ovarian development and the type of spawning of a species. Although, distinguishing oocytes on histological images requires a visual and subjective interpretation by the specialist. With the development of deep learning techniques, automatic object detection has become an important mechanism for this task. However, studies that use deep learning techniques have not been widely explored for the analysis of fish oocyte samples so far. In this paper, we propose the use of YOLO, a family of convolutional neural networks, for oocyte morphology detection of Centropomus undecimalis fish. The research uses an image database with 5,680 oocytes with different maturation stadiums (PV - pre-vitellogenesis, VI - early vitellogenesis and VF - late vitellogenesis), in histological images, divided into training, testing and validation, and detection performed by YOLOv3, YOLOv4, and YOLOv5 architectures. The results obtained were promising, highlighting that the YOLOv5l model, in the detection of oocytes of the VF class, reached the best values in the metrics precision, recall, [email protected] and [email protected], with 85.4%, 95.3%, 95.7%, and 75.9%, respectively. When considering all classes, YOLOv5l was the model that obtained the best results in the analyzed metrics.

LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
Universidade Federal do Maranhão (BR)
Openalex Percentile: Top 44%
Reproductive biology and impacts on aquatic species
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.