ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech

<i>Hirudo verbana</i> Carena, 1820, commonly known as the southern medicinal leech, is one of several European medicinal leeches, whose full diversity has just recently started to be uncovered. Historically, it has been widely used as a medicinal leech and for centuries it was treated erroneously under the specific name of <i>Hirudo medicinalis</i> L. 1758. Recent molecular and taxonomic analyses have revealed subspecific diversity within the morphospecies <i>H. verbana</i>. <i>Hirudo verbana</i> is a blood-feeding species sucking blood from amphibians, fish, and mammals. It occupies freshwater habitats, typically shallow ponds and lakes. Studies show that this leech species has a "naturally limited microbiome", suggesting it may serve as a powerful model system for the study of gut microbiota. We expect this chromosome-level assembly of <i>H. verbana</i> to serve as a high-quality genomic resource for this most famous leech genus and to serve as a foundation to the study of the diversification and biodiversity of European medicinal leeches, as well as their gut-associated symbionts. The genome of <i>H. verbana</i> was assembled into two haplotypes through a phased assembly approach; however, only the primary haplotype was designated as the reference genome for annotation and downstream analyses. The entirety of the primary haplotype was assembled into 14 contiguous chromosomal pseudomolecules, including the mitogenome. This chromosome-level assembly encompasses 0.18 Gb, composed of 277 contigs and 27 scaffolds, with contig and scaffold N50 values of 1.3 Mb and 13.4 Mb, respectively.

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Publication Details

Journal
Open Research Europe
Published
2025-12-22
DOI
https://doi.org/10.12688/openreseurope.21672.1
Primary Topic
Leech Biology and Applications
Type
article
Field-Weighted Citation Impact
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article

ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech

Thomas Marcussen, Rebekah A. Oomen, Kerstin Howe, Astrid Bohne et al.
Open Research Europe
Leech Biology and Applications
article

ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech

Thomas Marcussen, Rebekah A. Oomen, Kerstin Howe, Astrid Bohne, Chiara Bortoluzzi, Shane McCarthy, Caroline Howard, Anna Lazar, Jonathan M.D. Wood, Alejandro Manzano-Marín, Torsten H. Struck, Rita Monteiro, Fergal Martin
article en

Abstract

<i>Hirudo verbana</i> Carena, 1820, commonly known as the southern medicinal leech, is one of several European medicinal leeches, whose full diversity has just recently started to be uncovered. Historically, it has been widely used as a medicinal leech and for centuries it was treated erroneously under the specific name of <i>Hirudo medicinalis</i> L. 1758. Recent molecular and taxonomic analyses have revealed subspecific diversity within the morphospecies <i>H. verbana</i>. <i>Hirudo verbana</i> is a blood-feeding species sucking blood from amphibians, fish, and mammals. It occupies freshwater habitats, typically shallow ponds and lakes. Studies show that this leech species has a "naturally limited microbiome", suggesting it may serve as a powerful model system for the study of gut microbiota. We expect this chromosome-level assembly of <i>H. verbana</i> to serve as a high-quality genomic resource for this most famous leech genus and to serve as a foundation to the study of the diversification and biodiversity of European medicinal leeches, as well as their gut-associated symbionts. The genome of <i>H. verbana</i> was assembled into two haplotypes through a phased assembly approach; however, only the primary haplotype was designated as the reference genome for annotation and downstream analyses. The entirety of the primary haplotype was assembled into 14 contiguous chromosomal pseudomolecules, including the mitogenome. This chromosome-level assembly encompasses 0.18 Gb, composed of 277 contigs and 27 scaffolds, with contig and scaffold N50 values of 1.3 Mb and 13.4 Mb, respectively.

Open Research EuropeVol. 5
Openalex Percentile: Top 28%
Leech Biology and Applications
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