Benchmarking Isomerization Energies for C5$$ {\mathrm{C}}_5 $$–C7$$ {\mathrm{C}}_7 $$ Hydrocarbons: The ISOC7 Database

Highly accurate benchmark databases are critical for the development of robust and computationally efficient electronic structure methods. We introduce the ISOC7 database, a diverse collection of 1308 unique constitutional isomers of <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics> <mml:mrow> <mml:msub><mml:mrow><mml:mtext>C</mml:mtext></mml:mrow> <mml:mrow><mml:mn>5</mml:mn></mml:mrow> </mml:msub> </mml:mrow> <mml:annotation>$$ {\mathrm{C}}_5 $$</mml:annotation></mml:semantics> </mml:math> - <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics> <mml:mrow> <mml:msub><mml:mrow><mml:mtext>C</mml:mtext></mml:mrow> <mml:mrow><mml:mn>7</mml:mn></mml:mrow> </mml:msub> </mml:mrow> <mml:annotation>$$ {\mathrm{C}}_7 $$</mml:annotation></mml:semantics> </mml:math> saturated and unsaturated hydrocarbons with reference isomerization energies at the CCSD(T)/CBS level of theory, obtained via the W1-F12 thermochemical protocol. The isomerization energies in this dataset span over 146 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> . This database was used to conduct a rigorous benchmark assessment of a wide hierarchy of computational methods. The performance of 40 contemporary density functional theory (DFT) functionals reveals a general, albeit not monotonic, improvement along the rungs of Jacob's Ladder, with lower-rung GGA and MGGA functionals providing generally poor performance. The range-separated hybrid-meta-GGA functional <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mi>ω</mml:mi></mml:mrow> <mml:annotation>$$ \omega $$</mml:annotation></mml:semantics> </mml:math> B97M-D4 emerges as the top DFT performer with a root-mean-square deviation (RMSD) of 1.62 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> . We also evaluated computationally economical semiempirical and tight-binding methods. While traditional semiempirical approaches are inadequate, the modern g-xTB tight-binding method achieves a respectable RMSD of 4.14 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> . Remarkably, the machine-learned neural network potential AIMNet2 delivers exceptional accuracy, achieving an RMSD of 1.67 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> , rivaling the performance of the best DFT functional at a fraction of the computational cost. The ISOC7 database provides a challenging benchmark for advancing the development and validation of both quantum chemical and machine learning methods.

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Journal of Computational Chemistry
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2026-01-09
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https://doi.org/10.1002/jcc.70296
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Machine Learning in Materials Science
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article

Benchmarking Isomerization Energies for C5$$ {\mathrm{C}}_5 $$–C7$$ {\mathrm{C}}_7 $$ Hydrocarbons: The ISOC7 Database

Emmanouil Semidalas, Amir Karton
Journal of Computational Chemistry
Machine Learning in Materials Science
article

Benchmarking Isomerization Energies for C5$$ {\mathrm{C}}_5 $$–C7$$ {\mathrm{C}}_7 $$ Hydrocarbons: The ISOC7 Database

Emmanouil Semidalas, Amir Karton
article en

Abstract

Highly accurate benchmark databases are critical for the development of robust and computationally efficient electronic structure methods. We introduce the ISOC7 database, a diverse collection of 1308 unique constitutional isomers of <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics> <mml:mrow> <mml:msub><mml:mrow><mml:mtext>C</mml:mtext></mml:mrow> <mml:mrow><mml:mn>5</mml:mn></mml:mrow> </mml:msub> </mml:mrow> <mml:annotation>$$ {\mathrm{C}}_5 $$</mml:annotation></mml:semantics> </mml:math> - <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics> <mml:mrow> <mml:msub><mml:mrow><mml:mtext>C</mml:mtext></mml:mrow> <mml:mrow><mml:mn>7</mml:mn></mml:mrow> </mml:msub> </mml:mrow> <mml:annotation>$$ {\mathrm{C}}_7 $$</mml:annotation></mml:semantics> </mml:math> saturated and unsaturated hydrocarbons with reference isomerization energies at the CCSD(T)/CBS level of theory, obtained via the W1-F12 thermochemical protocol. The isomerization energies in this dataset span over 146 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> . This database was used to conduct a rigorous benchmark assessment of a wide hierarchy of computational methods. The performance of 40 contemporary density functional theory (DFT) functionals reveals a general, albeit not monotonic, improvement along the rungs of Jacob's Ladder, with lower-rung GGA and MGGA functionals providing generally poor performance. The range-separated hybrid-meta-GGA functional <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mi>ω</mml:mi></mml:mrow> <mml:annotation>$$ \omega $$</mml:annotation></mml:semantics> </mml:math> B97M-D4 emerges as the top DFT performer with a root-mean-square deviation (RMSD) of 1.62 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> . We also evaluated computationally economical semiempirical and tight-binding methods. While traditional semiempirical approaches are inadequate, the modern g-xTB tight-binding method achieves a respectable RMSD of 4.14 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> . Remarkably, the machine-learned neural network potential AIMNet2 delivers exceptional accuracy, achieving an RMSD of 1.67 <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mtext>kcal</mml:mtext> <mml:mspace></mml:mspace> <mml:msup><mml:mrow><mml:mtext>mol</mml:mtext></mml:mrow> <mml:mrow><mml:mo>-</mml:mo> <mml:mn>1</mml:mn></mml:mrow> </mml:msup> </mml:mrow> <mml:annotation>$$ \mathrm{kcal}\kern0.3em {\mathrm{mol}}^{-1} $$</mml:annotation></mml:semantics> </mml:math> , rivaling the performance of the best DFT functional at a fraction of the computational cost. The ISOC7 database provides a challenging benchmark for advancing the development and validation of both quantum chemical and machine learning methods.

Journal of Computational ChemistryVol. 47(2)
National and Kapodistrian University of Athens (GR), University of New England (AU)
Openalex Percentile: Top 92%
Machine Learning in Materials Science
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