De novo transcriptome assembly of hemocytes from Haliotis discus hannai following poly(I:C) stimulation
Adult abalones were injected with poly(I:C), and hemocytes were collected at 2 and 7 days post-infection, along with uninfected controls. Total RNA was extracted and sequenced using the Illumina paired-end platform. After quality filtering, de novo assembly with Trinity produced 281,050 transcripts and 214,676 unigenes (N50: 722 bp and GC content: 41.06%). Open reading frames predicted by TransDecoder yielded 18,371 coding sequences. Functional annotation against Non-Redundant Protein, Universal Protein Resource, Protein Families, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes databases identified numerous immune-related genes The raw reads, assembled transcriptome, and annotation files are publicly available in the National Center for Biotechnology Information Sequence Read Archive and Figshare, providing a valuable reference for future studies on the innate immunity of H. discus hannai.
Authors
- Yong Jun Park
- Seung Hyun Yoo (ORCID: https://orcid.org/0000-0002-3383-017X)
- Gun-do Kim
- Jong-Oh Kim
- Mi Jeong Jo
- Ha Eun Lee
- Jeong Gyu Kim
Institutions
- Pukyong National University (KR)
Publication Details
- Journal
- BMC Genomic Data
- Published
- 2026-01-09
- DOI
- https://doi.org/10.1186/s12863-026-01405-x
- Primary Topic
- Marine Bivalve and Aquaculture Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00