De novo transcriptome assembly of hemocytes from Haliotis discus hannai following poly(I:C) stimulation

Adult abalones were injected with poly(I:C), and hemocytes were collected at 2 and 7 days post-infection, along with uninfected controls. Total RNA was extracted and sequenced using the Illumina paired-end platform. After quality filtering, de novo assembly with Trinity produced 281,050 transcripts and 214,676 unigenes (N50: 722 bp and GC content: 41.06%). Open reading frames predicted by TransDecoder yielded 18,371 coding sequences. Functional annotation against Non-Redundant Protein, Universal Protein Resource, Protein Families, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes databases identified numerous immune-related genes The raw reads, assembled transcriptome, and annotation files are publicly available in the National Center for Biotechnology Information Sequence Read Archive and Figshare, providing a valuable reference for future studies on the innate immunity of H. discus hannai.

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Publication Details

Journal
BMC Genomic Data
Published
2026-01-09
DOI
https://doi.org/10.1186/s12863-026-01405-x
Primary Topic
Marine Bivalve and Aquaculture Studies
Type
article
Field-Weighted Citation Impact
0.00
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article

De novo transcriptome assembly of hemocytes from Haliotis discus hannai following poly(I:C) stimulation

Yong Jun Park, Seung Hyun Yoo, Gun-do Kim, Jong-Oh Kim et al.
BMC Genomic Data
Marine Bivalve and Aquaculture Studies
article

De novo transcriptome assembly of hemocytes from Haliotis discus hannai following poly(I:C) stimulation

Yong Jun Park, Seung Hyun Yoo, Gun-do Kim, Jong-Oh Kim, Mi Jeong Jo, Ha Eun Lee, Jeong Gyu Kim
article en

Abstract

Adult abalones were injected with poly(I:C), and hemocytes were collected at 2 and 7 days post-infection, along with uninfected controls. Total RNA was extracted and sequenced using the Illumina paired-end platform. After quality filtering, de novo assembly with Trinity produced 281,050 transcripts and 214,676 unigenes (N50: 722 bp and GC content: 41.06%). Open reading frames predicted by TransDecoder yielded 18,371 coding sequences. Functional annotation against Non-Redundant Protein, Universal Protein Resource, Protein Families, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes databases identified numerous immune-related genes The raw reads, assembled transcriptome, and annotation files are publicly available in the National Center for Biotechnology Information Sequence Read Archive and Figshare, providing a valuable reference for future studies on the innate immunity of H. discus hannai.

BMC Genomic DataVol. 27(1)
Pukyong National University (KR)
Openalex Percentile: Top 95%
Marine Bivalve and Aquaculture Studies
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De novo transcriptome assembly of hemocytes from Haliotis discus hannai following poly(I:C) stimulation — Yong Jun Park, Seung Hyun Yoo, et al. · BMC Genomic Data (2026) | TGRS Research Map | TGRS