HSF1-dependent, long-range directional <i>HSPA1</i> gene motion to nuclear speckles is coupled to DDX39B condensate dynamics

Approximately 5-10% of the genome, enriched ∼10-fold in the most highly active genes, positions near deterministically within several hundred nm of nuclear speckles (NS). This includes the <i>HSPA1</i> locus, among the most strongly NS-associated genes. Here we address how <i>HSPA1</i> endogenous genes and transgenes stably position adjacent to the nuclear speckle periphery, facilitating their gene expression amplification. Live-cell imaging demonstrates a transcription-dependent speckle-anchoring of <i>HSPA1</i> genes. Removal of this anchoring reveals sustained, long-range, curvilinear oscillations of the HSPA1 genes away from and back to nuclear speckles or between nuclear speckles. Curvilinear transgene movements are dependent on the transcription factor HSF1, largely independent of nuclear actin or cohesin, but unexpectedly spatially and temporally correlated with DDX39B condensate dynamics and dependent on DDX39B protein levels. We propose that stable nuclear speckle association of <i>HSPA1</i> results from combining metastable speckle anchoring with constitutive, restorative long-range chromosome movements driven by DDX39B condensate dynamics.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-08
DOI
https://doi.org/10.64898/2026.01.07.698255
Primary Topic
Genomics and Chromatin Dynamics
Type
article
Field-Weighted Citation Impact
0.00

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article

HSF1-dependent, long-range directional HSPA1 gene motion to nuclear speckles is coupled to DDX39B condensate dynamics

Andrew S. Belmont
bioRxiv (Cold Spring Harbor Laboratory)
Genomics and Chromatin Dynamics
article

HSF1-dependent, long-range directional HSPA1 gene motion to nuclear speckles is coupled to DDX39B condensate dynamics

Andrew S. Belmont
article en

Abstract

Approximately 5-10% of the genome, enriched ∼10-fold in the most highly active genes, positions near deterministically within several hundred nm of nuclear speckles (NS). This includes the <i>HSPA1</i> locus, among the most strongly NS-associated genes. Here we address how <i>HSPA1</i> endogenous genes and transgenes stably position adjacent to the nuclear speckle periphery, facilitating their gene expression amplification. Live-cell imaging demonstrates a transcription-dependent speckle-anchoring of <i>HSPA1</i> genes. Removal of this anchoring reveals sustained, long-range, curvilinear oscillations of the HSPA1 genes away from and back to nuclear speckles or between nuclear speckles. Curvilinear transgene movements are dependent on the transcription factor HSF1, largely independent of nuclear actin or cohesin, but unexpectedly spatially and temporally correlated with DDX39B condensate dynamics and dependent on DDX39B protein levels. We propose that stable nuclear speckle association of <i>HSPA1</i> results from combining metastable speckle anchoring with constitutive, restorative long-range chromosome movements driven by DDX39B condensate dynamics.

bioRxiv (Cold Spring Harbor Laboratory)
University of Illinois Urbana-Champaign (US)
National Institutes of Health, University of Illinois at Urbana-Champaign, National Institute of General Medical Sciences, Common Fund
Openalex Percentile: Top 93%
Genomics and Chromatin Dynamics
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HSF1-dependent, long-range directional <i>HSPA1</i> gene motion to nuclear speckles is coupled to DDX39B condensate dynamics — Andrew S. Belmont · bioRxiv (Cold Spring Harbor Laboratory) (2026) | TGRS Research Map | TGRS