Algorithmic unfolding for image reconstruction and localization problems in single-molecule fluorescence microscopy

Abstract We propose an unfolded accelerated projected-gradient descent procedure to estimate model and algorithmic parameters for super-resolution and molecule localization problems in fluorescence microscopy. The variational lower-level constraint enforces sparsity of the solution and encodes different noise statistics (Gaussian, Poisson), while the upper-level cost assesses optimality w.r.t. the task considered. In more details, a standard $\ell _{2}$ cost is considered for image reconstruction (e.g. deconvolution/super-resolution, semi-blind deconvolution) problems, while a smoothed $\ell _{1}$ loss with learned binarization is employed to assess localization precision in some exemplary fluorescence microscopy problems exploiting single-molecule activation. Several numerical experiments are reported to validate the proposed approach on both synthetic and benchmark images from the ISBI datasets.

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Publication Details

Journal
IMA Journal of Applied Mathematics
Published
2025-10-01
DOI
https://doi.org/10.1093/imamat/hxaf025
Primary Topic
Advanced Fluorescence Microscopy Techniques
Type
article
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article

Algorithmic unfolding for image reconstruction and localization problems in single-molecule fluorescence microscopy

M. Prato, Luca Calatroni, Danilo Pezzi, Silvia Bonettini
IMA Journal of Applied Mathematics
Advanced Fluorescence Microscopy Techniques
article

Algorithmic unfolding for image reconstruction and localization problems in single-molecule fluorescence microscopy

M. Prato, Luca Calatroni, Danilo Pezzi, Silvia Bonettini
article en

Abstract

Abstract We propose an unfolded accelerated projected-gradient descent procedure to estimate model and algorithmic parameters for super-resolution and molecule localization problems in fluorescence microscopy. The variational lower-level constraint enforces sparsity of the solution and encodes different noise statistics (Gaussian, Poisson), while the upper-level cost assesses optimality w.r.t. the task considered. In more details, a standard $\ell _{2}$ cost is considered for image reconstruction (e.g. deconvolution/super-resolution, semi-blind deconvolution) problems, while a smoothed $\ell _{1}$ loss with learned binarization is employed to assess localization precision in some exemplary fluorescence microscopy problems exploiting single-molecule activation. Several numerical experiments are reported to validate the proposed approach on both synthetic and benchmark images from the ISBI datasets.

IMA Journal of Applied MathematicsVol. 90(5)
University of Modena and Reggio Emilia (IT), Ingegneria dei Sistemi (Italy) (IT)
Openalex Percentile: Top 20%
Advanced Fluorescence Microscopy Techniques
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Algorithmic unfolding for image reconstruction and localization problems in single-molecule fluorescence microscopy — M. Prato, Luca Calatroni, et al. · IMA Journal of Applied Mathematics (2025) | TGRS Research Map | TGRS