Sequence determinants of <scp>RNA</scp> G‐quadruplex unfolding by Arg‐rich regions

RNA sequences with the potential to form G-quadruplexes (rGQs) are widespread but largely unfolded in cells by unknown mechanisms. rGQ folding status is a critical regulator of RNA splicing and translation. We show that rGQs can be unfolded by SR proteins, SR-related proteins, and other Arg-rich proteins, including SRSF1, SRSF3, SRSF9, U1-70K, and U2AF1. The length and composition of Arg-rich regions are key determinants of this activity: Arg residues are the primary drivers, while acidic residues attenuate the unfolding activity. To unfold ARPC2 rGQ, at least 13 Arg residues are required. Our findings identify Arg-rich proteins as previously unrecognized, helicase-independent regulators of rGQ structures, with potential broad impacts on RNA processing that merit further investigation.

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Publication Details

Journal
FEBS Letters
Published
2026-01-09
DOI
https://doi.org/10.1002/1873-3468.70274
Citations
1
Primary Topic
RNA Research and Splicing
Type
article
Field-Weighted Citation Impact
22.24
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Sequence determinants of RNA G‐quadruplex unfolding by Arg‐rich regions

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Sequence determinants of RNA G‐quadruplex unfolding by Arg‐rich regions

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article en
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Abstract

RNA sequences with the potential to form G-quadruplexes (rGQs) are widespread but largely unfolded in cells by unknown mechanisms. rGQ folding status is a critical regulator of RNA splicing and translation. We show that rGQs can be unfolded by SR proteins, SR-related proteins, and other Arg-rich proteins, including SRSF1, SRSF3, SRSF9, U1-70K, and U2AF1. The length and composition of Arg-rich regions are key determinants of this activity: Arg residues are the primary drivers, while acidic residues attenuate the unfolding activity. To unfold ARPC2 rGQ, at least 13 Arg residues are required. Our findings identify Arg-rich proteins as previously unrecognized, helicase-independent regulators of rGQ structures, with potential broad impacts on RNA processing that merit further investigation.

FEBS Letters
University of South Carolina (US), University of Alabama at Birmingham (US), Livingston Public Schools (US)
Openalex Percentile: Top 3%
RNA Research and Splicing
22.24
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