Characterization of Korean Colorectal Cancer Reveals Novel Driver Gene and Clinically Relevant Mutations

Colorectal cancer (CRC) ranks as the third leading cause of cancer-related deaths worldwide, characterized by genomic heterogeneity arising from ethnic and interindividual differences. Producing region-specific data to characterize ethnic-specific somatic mutations is essential for advancing CRC research. Additionally, accurate somatic mutation detection requires paired tissue analyses to account for interindividual diversity. This study aims to highlight the importance of ethnic diversity in shaping CRC's genomic landscape and emphasize the necessity for region-specific data to refine diagnostic and therapeutic approaches. This study emphasizes the need for region-specific data by analyzing an unprecedented 197 paired samples from the Korean CRC cohort through whole-genome sequencing. We identified 78 potential driver genes. Notably, <i>CBWD5</i>, <i>LRRIQ3</i>, <i>TRIM64B</i>, <i>SPINK5</i>, and <i>ZNRF2</i> were linked to recurrence, presenting potential therapeutic targets. Our analysis revealed 30 mutational hotspots, with significant variants in <i>KRAS</i> (25%, G12A, G12D, G12V), <i>MAP1A</i> (12%, V2300G), and <i>TP53</i> (8%, R175H). We identified a significant co-occurrence between <i>KRAS</i> 12 mutation and <i>PIK3CA</i> 545 mutation. Our findings demonstrate potential driver genes and mutational hotspots associated with CRC patient, characterizing the mutational landscape related to clinical characteristics. Significantly advancing our understanding of CRC's heterogeneous nature, this study lays a solid foundation for devising more efficacious management strategies.

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Publication Details

Journal
MedComm
Published
2026-01-01
DOI
https://doi.org/10.1002/mco2.70584
Primary Topic
Cancer Genomics and Diagnostics
Type
article
Field-Weighted Citation Impact
0.00

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article

Characterization of Korean Colorectal Cancer Reveals Novel Driver Gene and Clinically Relevant Mutations

Hae Seul Lee, Hyeran Shim, Mi Ra Yu, Jong Lyul Lee et al.
MedComm
Cancer Genomics and Diagnostics
article

Characterization of Korean Colorectal Cancer Reveals Novel Driver Gene and Clinically Relevant Mutations

Hae Seul Lee, Hyeran Shim, Mi Ra Yu, Jong Lyul Lee, Junho Kang, Hyo Min Kim, K. Kim, Dai Sik Ko, Sung‐Bum Kang, Hyun Soo Kim, Young‐Joon Kim, Seung Eun Baek, Ga Hyun Kim, Tae‐You KIM, Kim Hk, Kyu Joo Park, Dong Min Lim, SungUk Bae, Jong‐Wook Park, Yun Hak Kim, Dongjun Lee, Hae Ryoun Park, Donghee Kwak, Taeg Kyu Kwon, Sunghwan Cho, Chang‐Kyu Oh, Hansong Lee, Chang Sik Yu
article en

Abstract

Colorectal cancer (CRC) ranks as the third leading cause of cancer-related deaths worldwide, characterized by genomic heterogeneity arising from ethnic and interindividual differences. Producing region-specific data to characterize ethnic-specific somatic mutations is essential for advancing CRC research. Additionally, accurate somatic mutation detection requires paired tissue analyses to account for interindividual diversity. This study aims to highlight the importance of ethnic diversity in shaping CRC's genomic landscape and emphasize the necessity for region-specific data to refine diagnostic and therapeutic approaches. This study emphasizes the need for region-specific data by analyzing an unprecedented 197 paired samples from the Korean CRC cohort through whole-genome sequencing. We identified 78 potential driver genes. Notably, <i>CBWD5</i>, <i>LRRIQ3</i>, <i>TRIM64B</i>, <i>SPINK5</i>, and <i>ZNRF2</i> were linked to recurrence, presenting potential therapeutic targets. Our analysis revealed 30 mutational hotspots, with significant variants in <i>KRAS</i> (25%, G12A, G12D, G12V), <i>MAP1A</i> (12%, V2300G), and <i>TP53</i> (8%, R175H). We identified a significant co-occurrence between <i>KRAS</i> 12 mutation and <i>PIK3CA</i> 545 mutation. Our findings demonstrate potential driver genes and mutational hotspots associated with CRC patient, characterizing the mutational landscape related to clinical characteristics. Significantly advancing our understanding of CRC's heterogeneous nature, this study lays a solid foundation for devising more efficacious management strategies.

MedCommVol. 7(1)
Yonsei University (KR), Asan Medical Center (KR), Seoul National University Hospital (KR), Seoul National University Bundang Hospital (KR), University of Ulsan (KR), Gachon University Gil Medical Center (KR), Keimyung University Dongsan Medical Center (KR), Pusan National University Yangsan Hospital (KR), Pusan National University (KR), Keimyung University (KR)
Korea Disease Control and Prevention Agency, National Research Foundation, Korea Health Industry Development Institute, National Research Foundation of Korea, Ministry of Science and ICT, South Korea, Korea Research Environment Open Network
Good health and well-being
Openalex Percentile: Top 94%
Cancer Genomics and Diagnostics
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