Identification of multiple prognostic biomarker sets for risk stratification in SKCM

Our results show that only one gene-expression signature is not sufficient to predict SKCM prognosis. Alternatively, high-risk patients can be accurately predicted using multiple independent biomarker sets providing flexibility in both clinical and computational practices. The high similarity in the results of all seven sets (AUC 0.84-0.91; Kappa 0.48-0.64) signifies the stability and strength of the method. The external validation of these biomarkers with GEO data also helps to confirm the reliability of these biomarkers and hints at their potential wider applicability. This work facilitates transparency by ensuring that all the data and code is publicly accessible (https://github.com/raghavagps/skcm_prognostic_biomarker), which also promotes future developments in creating multi-signature prognostic tools in melanoma.

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Publication Details

Journal
Frontiers in Bioinformatics
Published
2026-01-07
DOI
https://doi.org/10.3389/fbinf.2025.1624329
Primary Topic
Cutaneous Melanoma Detection and Management
Type
article
Field-Weighted Citation Impact
0.00

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article

Identification of multiple prognostic biomarker sets for risk stratification in SKCM

Shivani Malik, Ritu Tomer, Akanksha Arora, Gajendra P. S. Raghava
Frontiers in Bioinformatics
Cutaneous Melanoma Detection and Management
article

Identification of multiple prognostic biomarker sets for risk stratification in SKCM

Shivani Malik, Ritu Tomer, Akanksha Arora, Gajendra P. S. Raghava
article en

Abstract

Our results show that only one gene-expression signature is not sufficient to predict SKCM prognosis. Alternatively, high-risk patients can be accurately predicted using multiple independent biomarker sets providing flexibility in both clinical and computational practices. The high similarity in the results of all seven sets (AUC 0.84-0.91; Kappa 0.48-0.64) signifies the stability and strength of the method. The external validation of these biomarkers with GEO data also helps to confirm the reliability of these biomarkers and hints at their potential wider applicability. This work facilitates transparency by ensuring that all the data and code is publicly accessible (https://github.com/raghavagps/skcm_prognostic_biomarker), which also promotes future developments in creating multi-signature prognostic tools in melanoma.

Frontiers in BioinformaticsVol. 5
Indraprastha Institute of Information Technology Delhi (IN)
Department of Science and Technology, Ministry of Science and Technology, India
Openalex Percentile: Top 95%
Cutaneous Melanoma Detection and Management
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Identification of multiple prognostic biomarker sets for risk stratification in SKCM — Shivani Malik, Ritu Tomer, et al. · Frontiers in Bioinformatics (2026) | TGRS Research Map | TGRS