Identification of multiple prognostic biomarker sets for risk stratification in SKCM
Our results show that only one gene-expression signature is not sufficient to predict SKCM prognosis. Alternatively, high-risk patients can be accurately predicted using multiple independent biomarker sets providing flexibility in both clinical and computational practices. The high similarity in the results of all seven sets (AUC 0.84-0.91; Kappa 0.48-0.64) signifies the stability and strength of the method. The external validation of these biomarkers with GEO data also helps to confirm the reliability of these biomarkers and hints at their potential wider applicability. This work facilitates transparency by ensuring that all the data and code is publicly accessible (https://github.com/raghavagps/skcm_prognostic_biomarker), which also promotes future developments in creating multi-signature prognostic tools in melanoma.
Authors
- Shivani Malik (ORCID: https://orcid.org/0009-0005-2681-7646)
- Ritu Tomer (ORCID: https://orcid.org/0000-0002-6171-8660)
- Akanksha Arora (ORCID: https://orcid.org/0000-0001-6774-7887)
- Gajendra P. S. Raghava
Institutions
- Indraprastha Institute of Information Technology Delhi (IN)
Publication Details
- Journal
- Frontiers in Bioinformatics
- Published
- 2026-01-07
- DOI
- https://doi.org/10.3389/fbinf.2025.1624329
- Primary Topic
- Cutaneous Melanoma Detection and Management
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Department of Science and Technology, Ministry of Science and Technology, India