ChemGraph as an agentic framework for computational chemistry workflows

Atomistic simulations are essential in chemistry and materials science but remain challenging to run due to the expert knowledge required for the setup, execution, and validation stages of these calculations. We present ChemGraph, an agentic framework powered by artificial intelligence and state-of-the-art simulation tools to streamline and automate computational chemistry and materials science workflows. ChemGraph leverages graph neural network-based foundation models for accurate yet computationally efficient calculations and large language models (LLMs) for natural language understanding, task planning, and scientific reasoning to provide an intuitive and interactive interface. We evaluate ChemGraph across 13 benchmark tasks and demonstrate that smaller LLMs (GPT-4o-mini, Claude-3.5-haiku, Qwen-2.5-14B) perform well on simple workflows, while more complex tasks benefit from using larger models. Importantly, we show that decomposing complex tasks into smaller subtasks through a multi-agent framework enables GPT-4o to reach perfect accuracy and smaller LLMs to match or exceed single-agent GPT-4o's performance in these benchmarks.

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Publication Details

Journal
Communications Chemistry
Published
2026-01-08
DOI
https://doi.org/10.1038/s42004-025-01776-9
Citations
2
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
32.17

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article

ChemGraph as an agentic framework for computational chemistry workflows

Murat Keçeli, Aditya Tanikanti, Thang D. Pham
2 citations
Communications Chemistry
Machine Learning in Materials Science
32.17
article

ChemGraph as an agentic framework for computational chemistry workflows

Murat Keçeli, Aditya Tanikanti, Thang D. Pham
article en
2 citations

Abstract

Atomistic simulations are essential in chemistry and materials science but remain challenging to run due to the expert knowledge required for the setup, execution, and validation stages of these calculations. We present ChemGraph, an agentic framework powered by artificial intelligence and state-of-the-art simulation tools to streamline and automate computational chemistry and materials science workflows. ChemGraph leverages graph neural network-based foundation models for accurate yet computationally efficient calculations and large language models (LLMs) for natural language understanding, task planning, and scientific reasoning to provide an intuitive and interactive interface. We evaluate ChemGraph across 13 benchmark tasks and demonstrate that smaller LLMs (GPT-4o-mini, Claude-3.5-haiku, Qwen-2.5-14B) perform well on simple workflows, while more complex tasks benefit from using larger models. Importantly, we show that decomposing complex tasks into smaller subtasks through a multi-agent framework enables GPT-4o to reach perfect accuracy and smaller LLMs to match or exceed single-agent GPT-4o's performance in these benchmarks.

Communications ChemistryVol. 9(1)
Argonne National Laboratory (US)
U.S. Department of Energy, Office of Science, Advanced Scientific Computing Research, Argonne National Laboratory
Quality Education
Openalex Percentile: Top 1%
Machine Learning in Materials Science
32.17
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ChemGraph as an agentic framework for computational chemistry workflows — Murat Keçeli, Aditya Tanikanti, et al. · Communications Chemistry (2026) | TGRS Research Map | TGRS