HONeD-in on Brain Activity: Deconvolving Passive Diffusion on the Structural Network from Functional Brain Signals

Brain regions perform distinct computations, and their signals propagate through the whole-brain white matter network. Yet, mathematical models that describe this signal propagation via <i>purely passive diffusion</i> can predict a considerable amount of the observed functional connectivity between regions. This raises a critical question: if so much functional connectivity can be explained by a <i>passive</i> process, how can we isolate the <i>active</i> process? Here, we calculate in closed-form an estimate for such an active signal in functional MRI by spatially deconvolving the effect of passive signal spread over the brain's structural connectivity using a higher-order network diffusion (HONeD) model. Across 770 Human Connectome Project subjects, we show that the resulting HONeD-innovation (HONeD-in) signal 1) sparsifies functional connectivity while retaining a well-connected network, 2) remodels resting-state networks (RSNs), 3) mixes the unimodal-multimodal hierarchical organization of RSNs into a circle with no clear hierarchy, and 4) deblurs task-activation maps. Together, our results highlight HONeD deconvolution as a generalizable new way to study resting-state and task fMRI brain signals.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-05
DOI
https://doi.org/10.64898/2026.01.05.697753
Primary Topic
Functional Brain Connectivity Studies
Type
article
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article

HONeD-in on Brain Activity: Deconvolving Passive Diffusion on the Structural Network from Functional Brain Signals

Benjamin Snow Sipes, Fahimeh Arab, Ashish Raj, Srikantan Nagarajan
bioRxiv (Cold Spring Harbor Laboratory)
Functional Brain Connectivity Studies
article

HONeD-in on Brain Activity: Deconvolving Passive Diffusion on the Structural Network from Functional Brain Signals

Benjamin Snow Sipes, Fahimeh Arab, Ashish Raj, Srikantan Nagarajan
article en

Abstract

Brain regions perform distinct computations, and their signals propagate through the whole-brain white matter network. Yet, mathematical models that describe this signal propagation via <i>purely passive diffusion</i> can predict a considerable amount of the observed functional connectivity between regions. This raises a critical question: if so much functional connectivity can be explained by a <i>passive</i> process, how can we isolate the <i>active</i> process? Here, we calculate in closed-form an estimate for such an active signal in functional MRI by spatially deconvolving the effect of passive signal spread over the brain's structural connectivity using a higher-order network diffusion (HONeD) model. Across 770 Human Connectome Project subjects, we show that the resulting HONeD-innovation (HONeD-in) signal 1) sparsifies functional connectivity while retaining a well-connected network, 2) remodels resting-state networks (RSNs), 3) mixes the unimodal-multimodal hierarchical organization of RSNs into a circle with no clear hierarchy, and 4) deblurs task-activation maps. Together, our results highlight HONeD deconvolution as a generalizable new way to study resting-state and task fMRI brain signals.

bioRxiv (Cold Spring Harbor Laboratory)
University of California, San Francisco (US)
Industry, innovation and infrastructure
Openalex Percentile: Top 95%
Functional Brain Connectivity Studies
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HONeD-in on Brain Activity: Deconvolving Passive Diffusion on the Structural Network from Functional Brain Signals — Benjamin Snow Sipes, Fahimeh Arab, et al. · bioRxiv (Cold Spring Harbor Laboratory) (2026) | TGRS Research Map | TGRS