Transcriptomic Features and Odorant Receptor Discovery in the Endangered Predatory Beetle <i>Damaster mirabilissimus mirabilissimus</i>

ABSTRACT We generated a de novo transcriptome for the endangered predatory ground beetle Damaster mirabilissimus mirabilissimus using the Illumina HiSeq 4000 platform (150‐bp paired‐end). Sequencing produced 66,553,052 raw reads (≈10 Gbp), of which 66,253,375 remained after quality filtering. Trinity assembly yielded an N50 of 2643 bp. Assembly completeness assessed with BUSCO (Insecta_odb9 dataset; 1367 orthologs) indicated 96.5% complete and 3.1% missing genes, supporting high overall quality. Functional annotation was performed against the PANM, Swiss‐Prot, UniGene, and KOG databases, and functional classification employed KOG, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and InterProScan. We further identified 2050 transcriptome‐derived simple sequence repeats (SSRs), with the dinucleotide motif AC being the most frequent ( n = 77). Collectively, this dataset provides a primary functional‐genomic resource for a nonmodel, threatened insect lacking a reference genome, delivers a candidate set for chemosensory gene families, including odorant receptors (ORs), and establishes a foundation for subsequent in vitro deorphanization and field‐based chemical‐ecology validation.

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Publication Details

Journal
Entomological Research
Published
2026-01-01
DOI
https://doi.org/10.1111/1748-5967.70089
Primary Topic
Neurobiology and Insect Physiology Research
Type
article
Field-Weighted Citation Impact
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article

Transcriptomic Features and Odorant Receptor Discovery in the Endangered Predatory Beetle Damaster mirabilissimus mirabilissimus

Yong Hun Jo, Cho‐I Moon, Hyeon Jun Shin, Jun Yang Jeong et al.
Entomological Research
Neurobiology and Insect Physiology Research
article

Transcriptomic Features and Odorant Receptor Discovery in the Endangered Predatory Beetle Damaster mirabilissimus mirabilissimus

Yong Hun Jo, Cho‐I Moon, Hyeon Jun Shin, Jun Yang Jeong, Hee Ju Hwang, Min Kyu Sang, Jie Eun Park, Yong Seok Lee, Hyeok Gyu Lee, Dae Kwon Song, Ki Wan Kim, Eui Chan Hong, Kyeong Won Lee, Heon‐Cheon Jeong, Jang Yi Seon, So Young Park, Sungsin Jo
article en

Abstract

ABSTRACT We generated a de novo transcriptome for the endangered predatory ground beetle Damaster mirabilissimus mirabilissimus using the Illumina HiSeq 4000 platform (150‐bp paired‐end). Sequencing produced 66,553,052 raw reads (≈10 Gbp), of which 66,253,375 remained after quality filtering. Trinity assembly yielded an N50 of 2643 bp. Assembly completeness assessed with BUSCO (Insecta_odb9 dataset; 1367 orthologs) indicated 96.5% complete and 3.1% missing genes, supporting high overall quality. Functional annotation was performed against the PANM, Swiss‐Prot, UniGene, and KOG databases, and functional classification employed KOG, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and InterProScan. We further identified 2050 transcriptome‐derived simple sequence repeats (SSRs), with the dinucleotide motif AC being the most frequent ( n = 77). Collectively, this dataset provides a primary functional‐genomic resource for a nonmodel, threatened insect lacking a reference genome, delivers a candidate set for chemosensory gene families, including odorant receptors (ORs), and establishes a foundation for subsequent in vitro deorphanization and field‐based chemical‐ecology validation.

Entomological ResearchVol. 56(1)
Soonchunhyang University (KR), National Institute of Biological Resources (KR)
National Research Foundation, Soonchunhyang University, Korea Basic Science Institute
Life in Land
Openalex Percentile: Top 95%
Neurobiology and Insect Physiology Research
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