Regulatory T cells clonally expand and contribute to stromal cell function in fibrotic response to synthetic implants
Fibrosis plays a key role in both chronic disease progression and failure of synthetic biomaterial implants. However, the contribution of adaptive immunity to fibrotic development remains incompletely understood, particularly for regulatory T cells (Tregs). Here, we used single-cell multiomic profiling, integrating transcriptomics with T cell receptor (TCR) sequencing, to map Treg heterogeneity and clonal dynamics in a synthetic material-induced model of fibrosis. We uncovered progressive Treg clonal expansion accompanied by TCR activation signatures and an increasingly immunosuppressive phenotype along a continuous transcriptional trajectory. These Tregs suppressed immune responses and influenced extracellular matrix and vascular gene expression. Cell-cell communication inference predicted Treg-driven activation of pro-fibrotic and vasculogenic transcriptional programs in fibroblasts and endothelial cells, including Sox-family transcription factors. Functional Treg depletion increased inflammation and significantly reduced neovascularization. Together, these findings identify Treg functions in the fibro-vascular niche through stromal cell modulation, highlighting immune-stromal interactions as an important axis in fibrosis.
Authors
- Sushma Nagaraj (ORCID: https://orcid.org/0000-0001-5166-1309)
- Jennifer H. Elisseeff (ORCID: https://orcid.org/0000-0002-5066-1996)
- David R. Maestas (ORCID: https://orcid.org/0000-0002-8207-1835)
- Elana J. Fertig (ORCID: https://orcid.org/0000-0003-3204-342X)
- Maria Browne
- Anna Ruta (ORCID: https://orcid.org/0000-0002-4258-1785)
- Joscelyn C. Mejías (ORCID: https://orcid.org/0000-0003-4397-9741)
- Alexandra N. Rindone (ORCID: https://orcid.org/0000-0003-2291-5933)
- Kavita Krishnan (ORCID: https://orcid.org/0000-0003-1345-0249)
- Peter Abraham (ORCID: https://orcid.org/0009-0008-9506-8193)
- Locke Davenport Huyer
- Elise Gray-Gaillard
- Frank Haoning Yu
- Drew M. Pardoll
- A. Shri Ramanujam
Institutions
- University of Maryland, Baltimore (US)
- Dalhousie University (CA)
- Johns Hopkins University (US)
- Johns Hopkins Medicine (US)
- The Wallace H. Coulter Department of Biomedical Engineering (US)
- Sidney Kimmel Comprehensive Cancer Center (US)
Publication Details
- Journal
- bioRxiv (Cold Spring Harbor Laboratory)
- Published
- 2026-01-06
- DOI
- https://doi.org/10.64898/2026.01.05.697727
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Science Foundation
- Johns Hopkins University
- National Institutes of Health
- National Institute on Aging
- National Cancer Institute