Regulatory T cells clonally expand and contribute to stromal cell function in fibrotic response to synthetic implants

Fibrosis plays a key role in both chronic disease progression and failure of synthetic biomaterial implants. However, the contribution of adaptive immunity to fibrotic development remains incompletely understood, particularly for regulatory T cells (Tregs). Here, we used single-cell multiomic profiling, integrating transcriptomics with T cell receptor (TCR) sequencing, to map Treg heterogeneity and clonal dynamics in a synthetic material-induced model of fibrosis. We uncovered progressive Treg clonal expansion accompanied by TCR activation signatures and an increasingly immunosuppressive phenotype along a continuous transcriptional trajectory. These Tregs suppressed immune responses and influenced extracellular matrix and vascular gene expression. Cell-cell communication inference predicted Treg-driven activation of pro-fibrotic and vasculogenic transcriptional programs in fibroblasts and endothelial cells, including Sox-family transcription factors. Functional Treg depletion increased inflammation and significantly reduced neovascularization. Together, these findings identify Treg functions in the fibro-vascular niche through stromal cell modulation, highlighting immune-stromal interactions as an important axis in fibrosis.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-06
DOI
https://doi.org/10.64898/2026.01.05.697727
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00

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article

Regulatory T cells clonally expand and contribute to stromal cell function in fibrotic response to synthetic implants

Sushma Nagaraj, Jennifer H. Elisseeff, David R. Maestas, Elana J. Fertig et al.
bioRxiv (Cold Spring Harbor Laboratory)
Single-cell and spatial transcriptomics
article

Regulatory T cells clonally expand and contribute to stromal cell function in fibrotic response to synthetic implants

Sushma Nagaraj, Jennifer H. Elisseeff, David R. Maestas, Elana J. Fertig, Maria Browne, Anna Ruta, Joscelyn C. Mejías, Alexandra N. Rindone, Kavita Krishnan, Peter Abraham, Locke Davenport Huyer, Elise Gray-Gaillard, Frank Haoning Yu, Drew M. Pardoll, A. Shri Ramanujam
article en

Abstract

Fibrosis plays a key role in both chronic disease progression and failure of synthetic biomaterial implants. However, the contribution of adaptive immunity to fibrotic development remains incompletely understood, particularly for regulatory T cells (Tregs). Here, we used single-cell multiomic profiling, integrating transcriptomics with T cell receptor (TCR) sequencing, to map Treg heterogeneity and clonal dynamics in a synthetic material-induced model of fibrosis. We uncovered progressive Treg clonal expansion accompanied by TCR activation signatures and an increasingly immunosuppressive phenotype along a continuous transcriptional trajectory. These Tregs suppressed immune responses and influenced extracellular matrix and vascular gene expression. Cell-cell communication inference predicted Treg-driven activation of pro-fibrotic and vasculogenic transcriptional programs in fibroblasts and endothelial cells, including Sox-family transcription factors. Functional Treg depletion increased inflammation and significantly reduced neovascularization. Together, these findings identify Treg functions in the fibro-vascular niche through stromal cell modulation, highlighting immune-stromal interactions as an important axis in fibrosis.

bioRxiv (Cold Spring Harbor Laboratory)
University of Maryland, Baltimore (US), Dalhousie University (CA), Johns Hopkins University (US), Johns Hopkins Medicine (US), The Wallace H. Coulter Department of Biomedical Engineering (US), Sidney Kimmel Comprehensive Cancer Center (US)
National Science Foundation, Johns Hopkins University, National Institutes of Health, National Institute on Aging, National Cancer Institute
Good health and well-being
Openalex Percentile: Top 95%
Single-cell and spatial transcriptomics
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