HarmoFGL: Harmonizing GNN Latent Factors for Federated Graph Learning

Federated graph learning (FGL), as a privacy-preserving paradigm for distributed graph data training, aims to resolve graph data isolation issues under the framework of federated learning (FL). Despite the significant efforts made by existing FGL methods, two key challenges are still not well addressed: 1) how to mitigate graph heterogeneity in clients arising from feature deviation and structural deviation and 2) how to devise a favorable aggregation mechanism to maximize the client's benefit from collaborative training with privacy preserving. To tackle these issues, we take a perspective of latent factor and propose a HarmoFGL framework by Harmonizing graph neural network (GNN) latent factors for Federated Graph Learning, achieving cross-client federated training by coordinating personalized aggregation and client-level representation in a symbiotic space. To alleviate feature deviation, an implicit feature crossing (IFC) approach is proposed through the disentanglement of higher order feature dependency into client-universal and client-specific interactions. As for the graph heterogeneity induced by structural deviation, we establish a cross-client symbiotic parameter space spanned by GNN latent factors, on which a client-level representation is derived to characterize the inherent properties of clients. On the server side, on the basis of client relevance-driven personalized parameter aggregation, graph Laplacian regularization on client-level representations is implemented for collaborative training. Experimental results on five public graph datasets and two medical datasets demonstrate the effectiveness of HarmoFGL.

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Publication Details

Journal
IEEE Transactions on Neural Networks and Learning Systems
Published
2026-01-01
DOI
https://doi.org/10.1109/tnnls.2025.3648828
Primary Topic
Privacy-Preserving Technologies in Data
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article
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article

HarmoFGL: Harmonizing GNN Latent Factors for Federated Graph Learning

Yawei Zhao, Yeyu Yan, Zhenfeng Zhu, Shuai Zheng et al.
IEEE Transactions on Neural Networks and Learning Systems
Privacy-Preserving Technologies in Data
article

HarmoFGL: Harmonizing GNN Latent Factors for Federated Graph Learning

Yawei Zhao, Yeyu Yan, Zhenfeng Zhu, Shuai Zheng, Yao Zhao, Hongli Xu, Kunlun He
article en

Abstract

Federated graph learning (FGL), as a privacy-preserving paradigm for distributed graph data training, aims to resolve graph data isolation issues under the framework of federated learning (FL). Despite the significant efforts made by existing FGL methods, two key challenges are still not well addressed: 1) how to mitigate graph heterogeneity in clients arising from feature deviation and structural deviation and 2) how to devise a favorable aggregation mechanism to maximize the client's benefit from collaborative training with privacy preserving. To tackle these issues, we take a perspective of latent factor and propose a HarmoFGL framework by Harmonizing graph neural network (GNN) latent factors for Federated Graph Learning, achieving cross-client federated training by coordinating personalized aggregation and client-level representation in a symbiotic space. To alleviate feature deviation, an implicit feature crossing (IFC) approach is proposed through the disentanglement of higher order feature dependency into client-universal and client-specific interactions. As for the graph heterogeneity induced by structural deviation, we establish a cross-client symbiotic parameter space spanned by GNN latent factors, on which a client-level representation is derived to characterize the inherent properties of clients. On the server side, on the basis of client relevance-driven personalized parameter aggregation, graph Laplacian regularization on client-level representations is implemented for collaborative training. Experimental results on five public graph datasets and two medical datasets demonstrate the effectiveness of HarmoFGL.

IEEE Transactions on Neural Networks and Learning SystemsVol. PP
Beijing Jiaotong University (CN), Chinese PLA General Hospital (CN)
Openalex Percentile: Top 95%
Privacy-Preserving Technologies in Data
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HarmoFGL: Harmonizing GNN Latent Factors for Federated Graph Learning — Yawei Zhao, Yeyu Yan, et al. · IEEE Transactions on Neural Networks and Learning Systems (2026) | TGRS Research Map | TGRS