The chromosomal genome sequence of the sponge Phakellia ventilabrum (Linnaeus, 1767) and its associated microbial metagenome sequences

We present a genome assembly from a specimen of <i>Phakellia ventilabrum</i> (Porifera; Demospongiae; Bubarida; Bubaridae). The genome sequence has a total length of 211.92 megabases. Most of the assembly (99.97%) is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 24.36 kilobases in length. Gene annotation of this assembly by Ensembl identified 21 622 protein-coding genes. Thirty-three binned genomes were generated from the metagenome assembly, of which eight were classified as high-quality metagenome assembled genomes (MAGs) and of which four of the MAGs are fully circular. The MAGs were taxonomically assigned to Pseudomonadota (i.e. Candidatus Poriferihabitaceae), Nitrospirota, Nitrospinota, and the archaeal Nitrosopumilus clade.

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Publication Details

Journal
Wellcome Open Research
Published
2026-01-06
DOI
https://doi.org/10.12688/wellcomeopenres.25431.1
Primary Topic
Marine Sponges and Natural Products
Type
article
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article

The chromosomal genome sequence of the sponge Phakellia ventilabrum (Linnaeus, 1767) and its associated microbial metagenome sequences

U Hentschel, Noah Gettle, Ana Farrar Riesgo, EBI Aquatic Symbiosis Genomics Data Portal Team et al.
Wellcome Open Research
Marine Sponges and Natural Products
article

The chromosomal genome sequence of the sponge Phakellia ventilabrum (Linnaeus, 1767) and its associated microbial metagenome sequences

U Hentschel, Noah Gettle, Ana Farrar Riesgo, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership, Sergi Taboada, Carles Galià, Michael Paulini, Kathrin Busch, Haoyu Niu, Elizabeth Sinclair, Graeme Oatley, Dirk Erpenbeck, Camilla Santos, Eerik Aunin, Victoria McKenna, Rebecca O’Brien
article en

Abstract

We present a genome assembly from a specimen of <i>Phakellia ventilabrum</i> (Porifera; Demospongiae; Bubarida; Bubaridae). The genome sequence has a total length of 211.92 megabases. Most of the assembly (99.97%) is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 24.36 kilobases in length. Gene annotation of this assembly by Ensembl identified 21 622 protein-coding genes. Thirty-three binned genomes were generated from the metagenome assembly, of which eight were classified as high-quality metagenome assembled genomes (MAGs) and of which four of the MAGs are fully circular. The MAGs were taxonomically assigned to Pseudomonadota (i.e. Candidatus Poriferihabitaceae), Nitrospirota, Nitrospinota, and the archaeal Nitrosopumilus clade.

Wellcome Open ResearchVol. 11
Wellcome Sanger Institute (GB), UNSW Sydney (AU), GEOMAR Helmholtz Centre for Ocean Research Kiel (DE), Museo Nacional de Ciencias Naturales (ES), Bayerische Staatssammlung für Paläontologie und Geologie (DE), Ludwig-Maximilians-Universität München (DE)
Openalex Percentile: Top 95%
Marine Sponges and Natural Products
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