Whole genome sequencing data of early- and late-onset colorectal cancer in 99 Korean patients

Colorectal cancer (CRC) is the third most prevalent cancer type worldwide. Despite improvements in screening programs, the incidence of early-onset CRC (EOCRC) in patients under 50 years old is rapidly increasing, including in Korea, in contrast to the decreasing trend of late-onset CRC (LOCRC). However, a comprehensive biological understanding of CRC's coding and non-coding variants, onset-dependent prognostic variables, and the genetic and transcriptomic differences between EOCRC and LOCRC remains limited. To provide insights into this, we present a high-quality multi-omics dataset consisting of whole genome sequencing (WGS) and RNA sequencing (RNA-seq) data from 49 EOCRC and 50 LOCRC patients. WGS was performed using the DNBSEQ-T7 platform, generating 1.409 billion reads at an average depth of 37.70×. RNA-seq data previously generated from the same samples are included to support integrative analysis. This dataset enables comprehensive exploration of genomic and transcriptomic alterations in CRC and serves as a valuable resource for identifying onset-specific biomarkers and molecular features, ultimately supporting improved diagnosis and therapeutic strategies.

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Publication Details

Journal
Scientific Data
Published
2026-01-08
DOI
https://doi.org/10.1038/s41597-025-06517-0
Primary Topic
Genetic factors in colorectal cancer
Type
article
Field-Weighted Citation Impact
0.00

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article

Whole genome sequencing data of early- and late-onset colorectal cancer in 99 Korean patients

Chan Wook Kim, Yong Sik Yoon, Jong Lyul Lee, Ka Hee Tak et al.
Scientific Data
Genetic factors in colorectal cancer
article

Whole genome sequencing data of early- and late-onset colorectal cancer in 99 Korean patients

Chan Wook Kim, Yong Sik Yoon, Jong Lyul Lee, Ka Hee Tak, Seon-Yeop Kim, S. H. Kim, J. Daniel Park, Seung-Eun Oh, Ye Jin Ha, Jae-Yoon Kim, Sun-Woo Lee, Seung-Jin Park
article en

Abstract

Colorectal cancer (CRC) is the third most prevalent cancer type worldwide. Despite improvements in screening programs, the incidence of early-onset CRC (EOCRC) in patients under 50 years old is rapidly increasing, including in Korea, in contrast to the decreasing trend of late-onset CRC (LOCRC). However, a comprehensive biological understanding of CRC's coding and non-coding variants, onset-dependent prognostic variables, and the genetic and transcriptomic differences between EOCRC and LOCRC remains limited. To provide insights into this, we present a high-quality multi-omics dataset consisting of whole genome sequencing (WGS) and RNA sequencing (RNA-seq) data from 49 EOCRC and 50 LOCRC patients. WGS was performed using the DNBSEQ-T7 platform, generating 1.409 billion reads at an average depth of 37.70×. RNA-seq data previously generated from the same samples are included to support integrative analysis. This dataset enables comprehensive exploration of genomic and transcriptomic alterations in CRC and serves as a valuable resource for identifying onset-specific biomarkers and molecular features, ultimately supporting improved diagnosis and therapeutic strategies.

Scientific DataVol. 13(1)
Asan Medical Center (KR), University of Ulsan (KR), Korea Research Institute of Bioscience and Biotechnology (KR), Korea University of Science and Technology (KR)
National Research Foundation, Korea Research Institute of Bioscience and Biotechnology, National Research Foundation of Korea, Ministry of Science and ICT, South Korea
Openalex Percentile: Top 96%
Genetic factors in colorectal cancer
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