A universal polyphosphate kinase powers in vitro transcription

Polyphosphate kinases (PPKs) catalyze phosphoryl transfer between polyphosphates and nucleotides. Polyphosphates are a cost-effective source of phosphorylating power, making PPKs attractive enzymes for nucleotide production. However, at present, applications that require the simultaneous utilization of diverse nucleotides are not possible due to the restricted substrate profiles of PPKs. Here, we present a universal PPK capable of efficiently phosphorylating all eight common ribonucleotides (purines and pyrimidines, monophosphates and diphosphates) to triphosphates. Under optimal conditions, ~70% triphosphate conversion was observed for each substrate. To demonstrate the biotechnological potential of a universal PPK, we developed a one-pot assay for PPK-powered in vitro transcription. Primitive biology likely relied on enzyme promiscuity to support nascent metabolism with a compact proteome. This work highlights how applying the same principle to synthetic biology can facilitate the construction of complex in vitro reaction systems.

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Publication Details

Journal
Nature Communications
Published
2026-01-08
DOI
https://doi.org/10.1038/s41467-025-68012-9
Citations
1
Primary Topic
Coagulation, Bradykinin, Polyphosphates, and Angioedema
Type
article
Field-Weighted Citation Impact
36.93

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article

A universal polyphosphate kinase powers in vitro transcription

Ryusei Matsumoto, Tomoaki MaTsuura, Liam M. Longo, E Yamazaki et al.
1 citations
Nature Communications
Coagulation, Bradykinin, Polyphosphates, and Angioedema
36.93
article

A universal polyphosphate kinase powers in vitro transcription

Ryusei Matsumoto, Tomoaki MaTsuura, Liam M. Longo, E Yamazaki, Ako Kagawa, Takayoshi Watanabe
article en
1 citations

Abstract

Polyphosphate kinases (PPKs) catalyze phosphoryl transfer between polyphosphates and nucleotides. Polyphosphates are a cost-effective source of phosphorylating power, making PPKs attractive enzymes for nucleotide production. However, at present, applications that require the simultaneous utilization of diverse nucleotides are not possible due to the restricted substrate profiles of PPKs. Here, we present a universal PPK capable of efficiently phosphorylating all eight common ribonucleotides (purines and pyrimidines, monophosphates and diphosphates) to triphosphates. Under optimal conditions, ~70% triphosphate conversion was observed for each substrate. To demonstrate the biotechnological potential of a universal PPK, we developed a one-pot assay for PPK-powered in vitro transcription. Primitive biology likely relied on enzyme promiscuity to support nascent metabolism with a compact proteome. This work highlights how applying the same principle to synthetic biology can facilitate the construction of complex in vitro reaction systems.

Nature CommunicationsVol. 17(1)
OncoTherapy Science (Japan) (JP), Life Science Institute (JP), Blue Marble Space (US), Institute of Science Tokyo (JP)
National Aeronautics and Space Administration, Nuclear Safety and Security Commission, Waseda University, Japan Society for the Promotion of Science
Openalex Percentile: Top 2%
Coagulation, Bradykinin, Polyphosphates, and Angioedema
36.93
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