Epidemiology of ESBL-Producing, Carbapenem-Resistant, and Carbapenemase-Producing Enterobacterales in Southern Africa

<b>Background/Objectives</b>: Antimicrobial resistance (AMR) among Enterobacterales poses a major threat to public health in Southern Africa and has led to limited treatment options and increased mortality. Despite Africa bearing the brunt, there is limited data on the epidemiology and molecular epidemiology of the genetic determinants of β-lactam and/or carbapenem resistance. This narrative literature review summarizes the epidemiology and molecular characteristics of extended-spectrum β-lactamase-producing Enterobacterales (ESBL-PE), carbapenem-resistant Enterobacterales (CRE), and carbapenemase-producing Enterobacterales (CPE) in Southern Africa, while identifying data gaps and surveillance challenges. <b>Methods</b>: A comprehensive literature review was conducted using peer-reviewed articles from ten Southern African countries, including South Africa, Lesotho, Eswatini, Botswana, Namibia, Angola, Zambia, Zimbabwe, Mozambique, and Malawi, reporting the epidemiology and/or molecular characterization of ESBL-PE, CRE, and CPE. <b>Results</b>: ESBL-PE, CRE, and CPE pose an increasing healthcare threat in Southern Africa, with prevalence varying widely by source. <i>Klebsiella pneumoniae</i> and <i>E. coli</i> are the predominant ESBL-PE, CRE, and CPE species. The most frequent resistance genes are <i>bla<sub>CTX-M</sub></i> among ESBLs and <i>bla<sub>NDM</sub></i> and <i>bla<sub>OXA</sub></i> among carbapenemases, reflecting global patterns. However, molecular characterization across the region remains limited, with countries such as Botswana, Lesotho, Eswatini, Zambia, and Zimbabwe lacking sufficient data on the prevalence and diversity of these resistance determinants. <b>Conclusions</b>: Despite the paucity of genomic and epidemiological data, Southern Africa faces an urgent AMR challenge. Strengthening laboratory infrastructure, genomic surveillance, and regional coordination is crucial to mitigate AMR and guide antibiotic stewardship policies.

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Journal
Antibiotics
Published
2026-01-08
DOI
https://doi.org/10.3390/antibiotics15010069
Primary Topic
Antibiotic Resistance in Bacteria
Type
article
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article

Epidemiology of ESBL-Producing, Carbapenem-Resistant, and Carbapenemase-Producing Enterobacterales in Southern Africa

Paolo Gaibani, Giacomo Maria Paganotti, Pearl Ntshonga
Antibiotics
Antibiotic Resistance in Bacteria
article

Epidemiology of ESBL-Producing, Carbapenem-Resistant, and Carbapenemase-Producing Enterobacterales in Southern Africa

Paolo Gaibani, Giacomo Maria Paganotti, Pearl Ntshonga
article en

Abstract

<b>Background/Objectives</b>: Antimicrobial resistance (AMR) among Enterobacterales poses a major threat to public health in Southern Africa and has led to limited treatment options and increased mortality. Despite Africa bearing the brunt, there is limited data on the epidemiology and molecular epidemiology of the genetic determinants of β-lactam and/or carbapenem resistance. This narrative literature review summarizes the epidemiology and molecular characteristics of extended-spectrum β-lactamase-producing Enterobacterales (ESBL-PE), carbapenem-resistant Enterobacterales (CRE), and carbapenemase-producing Enterobacterales (CPE) in Southern Africa, while identifying data gaps and surveillance challenges. <b>Methods</b>: A comprehensive literature review was conducted using peer-reviewed articles from ten Southern African countries, including South Africa, Lesotho, Eswatini, Botswana, Namibia, Angola, Zambia, Zimbabwe, Mozambique, and Malawi, reporting the epidemiology and/or molecular characterization of ESBL-PE, CRE, and CPE. <b>Results</b>: ESBL-PE, CRE, and CPE pose an increasing healthcare threat in Southern Africa, with prevalence varying widely by source. <i>Klebsiella pneumoniae</i> and <i>E. coli</i> are the predominant ESBL-PE, CRE, and CPE species. The most frequent resistance genes are <i>bla<sub>CTX-M</sub></i> among ESBLs and <i>bla<sub>NDM</sub></i> and <i>bla<sub>OXA</sub></i> among carbapenemases, reflecting global patterns. However, molecular characterization across the region remains limited, with countries such as Botswana, Lesotho, Eswatini, Zambia, and Zimbabwe lacking sufficient data on the prevalence and diversity of these resistance determinants. <b>Conclusions</b>: Despite the paucity of genomic and epidemiological data, Southern Africa faces an urgent AMR challenge. Strengthening laboratory infrastructure, genomic surveillance, and regional coordination is crucial to mitigate AMR and guide antibiotic stewardship policies.

AntibioticsVol. 15(1)
University of Verona (IT), University of Botswana (BW), Azienda Ospedaliera Universitaria Integrata Verona (IT), University of Pennsylvania (US)
Industry, innovation and infrastructure
Openalex Percentile: Top 96%
Antibiotic Resistance in Bacteria
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