Time-resolved multiomics profiling reveals chromatin O-GlcNAc modification promotes senescence-associated transcriptional program

O-GlcNAc modification is a key cellular signal, but its role in regulating senescence-associated transcription remains poorly understood. Here, we apply a time-resolved chemical genomics strategy to map dynamic O-GlcNAc chromatin-associated proteins (OCPs) during oncogene-induced senescence (OIS) in primary human fibroblasts. Chromatin O-GlcNAc modification continues to accumulate, while 1,987 senescence-associated OCPs undergo dynamic shifts in genomic occupancy across diverse epigenetic chromatin states and display bimodal regulatory activities within the 3,466-gene senescence transcriptome. O-GlcNAc facilitates the formation of dual-function complexes: TF-SWI/SNF activates senescence-associated secretory phenotype (SASP) genes at promoters, whereas NuRD enforces the repression of cell-cycle regulators at enhancers. Furthermore, we identify O-GlcNAc modified JUN and GATAD2A as key regulators of OIS phenotypes in both in vitro and in vivo models of senescence-driven tumorigenesis. These findings reveal dynamic regulation and chromatin organization principles of O-GlcNAc-related epigenetic factors, providing insights into cellular senescence and potential therapeutic strategies.

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Publication Details

Journal
Nature Communications
Published
2026-01-08
DOI
https://doi.org/10.1038/s41467-025-68143-z
Primary Topic
Genomics and Chromatin Dynamics
Type
article
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article

Time-resolved multiomics profiling reveals chromatin O-GlcNAc modification promotes senescence-associated transcriptional program

Sijin Wu, Kairan Yu, Dong Qian, Qianmei Chen et al.
Nature Communications
Genomics and Chromatin Dynamics
article

Time-resolved multiomics profiling reveals chromatin O-GlcNAc modification promotes senescence-associated transcriptional program

Sijin Wu, Kairan Yu, Dong Qian, Qianmei Chen, Yajie Liu, Huang Huang, Jiawei Wu, Xuechen Li, Keren Zhang, Jianing Zhang, Xiaomin Zhong, Yan Ren, Yubo Liu, Wei Wang, Ran Zhao, Nana Zhang, Fanxu Meng, Lirui Han
article en

Abstract

O-GlcNAc modification is a key cellular signal, but its role in regulating senescence-associated transcription remains poorly understood. Here, we apply a time-resolved chemical genomics strategy to map dynamic O-GlcNAc chromatin-associated proteins (OCPs) during oncogene-induced senescence (OIS) in primary human fibroblasts. Chromatin O-GlcNAc modification continues to accumulate, while 1,987 senescence-associated OCPs undergo dynamic shifts in genomic occupancy across diverse epigenetic chromatin states and display bimodal regulatory activities within the 3,466-gene senescence transcriptome. O-GlcNAc facilitates the formation of dual-function complexes: TF-SWI/SNF activates senescence-associated secretory phenotype (SASP) genes at promoters, whereas NuRD enforces the repression of cell-cycle regulators at enhancers. Furthermore, we identify O-GlcNAc modified JUN and GATAD2A as key regulators of OIS phenotypes in both in vitro and in vivo models of senescence-driven tumorigenesis. These findings reveal dynamic regulation and chromatin organization principles of O-GlcNAc-related epigenetic factors, providing insights into cellular senescence and potential therapeutic strategies.

Nature CommunicationsVol. 17(1)
Dalian University of Technology (CN), Southern University of Science and Technology (CN), Dalian University (CN), Huaian First People’s Hospital (CN), Shanghai University of Traditional Chinese Medicine (CN), Shenzhen Institute of Building Research (China) (CN), State Key Laboratory of Synthetic Chemistry (CN), Liaoning Cancer Hospital & Institute (CN), Xi’an Jiaotong-Liverpool University (CN), Nanjing Medical University (CN), University of Hong Kong (HK), Northeastern University (CN)
Openalex Percentile: Top 96%
Genomics and Chromatin Dynamics
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