From Static Pathways to Dynamic Mechanisms: A Committor-Based Data-Driven Approach to Chemical Reactions

As computational chemistry methods evolve, dynamic effects have been increasingly recognized to govern chemical reaction pathways in both organic and inorganic systems. Here, we introduce a committor-based workflow that integrates a path-committor-consistent artificial neural network (PCCANN) with an iteratively trained hybrid-DFT-level message passing atomic convolutional encoder (MACE) potential. Beginning with a static nudged elastic band path, PCCANN extracts a committor-consistent string to represent the reactive ensemble. We illustrate the power of this methodology through two representative applications. First, we investigate an S<sub><i>N</i></sub>Ar reaction using MACE trained at hybrid DFT level with implicit solvent. The mechanism is found to be concerted, and the dynamic approach reveals a lower barrier than static treatments. Second, we apply the same protocol to the isomerization of protonated isobutanol to protonated 2-butanol, yielding a quantitatively accurate free-energy landscape. We uncover three competing channels: the established concerted mechanism and two asynchronous stepwise routes mediated by water and methyl transfer, all with comparable activation barriers. Notably, the stepwise pathways traverse metastable intermediates that, to the best of our knowledge, have not been described in prior mechanistic studies. Calculated barrier heights and intermediate stabilities are in close agreement with high-level DFT benchmarks, demonstrating the framework's accuracy. Together, these studies highlight mechanistic diversity across distinct systems and establish the synergistic PCCANN-MACE protocol as a proof-of-concept approach for committor-based discovery of complex reaction dynamics.

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Publication Details

Journal
Journal of Chemical Information and Modeling
Published
2026-01-05
DOI
https://doi.org/10.1021/acs.jcim.5c02906
Primary Topic
Machine Learning in Materials Science
Type
article
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article

From Static Pathways to Dynamic Mechanisms: A Committor-Based Data-Driven Approach to Chemical Reactions

Radu A. Talmazan, Christophe Chipot
Journal of Chemical Information and Modeling
Machine Learning in Materials Science
article

From Static Pathways to Dynamic Mechanisms: A Committor-Based Data-Driven Approach to Chemical Reactions

Radu A. Talmazan, Christophe Chipot
article en

Abstract

As computational chemistry methods evolve, dynamic effects have been increasingly recognized to govern chemical reaction pathways in both organic and inorganic systems. Here, we introduce a committor-based workflow that integrates a path-committor-consistent artificial neural network (PCCANN) with an iteratively trained hybrid-DFT-level message passing atomic convolutional encoder (MACE) potential. Beginning with a static nudged elastic band path, PCCANN extracts a committor-consistent string to represent the reactive ensemble. We illustrate the power of this methodology through two representative applications. First, we investigate an S<sub><i>N</i></sub>Ar reaction using MACE trained at hybrid DFT level with implicit solvent. The mechanism is found to be concerted, and the dynamic approach reveals a lower barrier than static treatments. Second, we apply the same protocol to the isomerization of protonated isobutanol to protonated 2-butanol, yielding a quantitatively accurate free-energy landscape. We uncover three competing channels: the established concerted mechanism and two asynchronous stepwise routes mediated by water and methyl transfer, all with comparable activation barriers. Notably, the stepwise pathways traverse metastable intermediates that, to the best of our knowledge, have not been described in prior mechanistic studies. Calculated barrier heights and intermediate stabilities are in close agreement with high-level DFT benchmarks, demonstrating the framework's accuracy. Together, these studies highlight mechanistic diversity across distinct systems and establish the synergistic PCCANN-MACE protocol as a proof-of-concept approach for committor-based discovery of complex reaction dynamics.

Journal of Chemical Information and ModelingVol. 66(2)
University of Illinois Urbana-Champaign (US), University of Chicago (US), Institute of Theoretical Physics (CN), Université de Lorraine (FR)
Affordable and clean energy
Openalex Percentile: Top 97%
Machine Learning in Materials Science
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