Crop GraphRAG: pest and disease knowledge base Q&A system for sustainable crop protection

Intelligent prevention and control of crop diseases and pests is a critical link in safeguarding food security. However, agricultural practitioners often face fragmented information and low retrieval efficiency when seeking accurate, actionable knowledge. Furthermore, general-purpose large language models (LLMs) are prone to providing inaccurate or erroneous answers when applied to these specialized domains. To address these challenges, we assembled a large-scale corpus of knowledge on crop diseases and pests. Via entity and relation extraction, we constructed a multi-relational knowledge graph covering crops, diseases, pests, symptoms, and control measures. We subsequently designed Crop GraphRAG, a new framework that integrates knowledge graphs with retrieval-augmented generation (RAG). This system enables local knowledge-base question answering by retrieving adjacency subgraphs for relevant entities alongside summary-based passage retrieval. To evaluate performance, we curated a domain-specific test suite of question-answer pairs and conducted comparative and ablation experiments. Our experiments demonstrate that the Crop GraphRAG framework offers distinct advantages in answer accuracy and coverage compared to baselines. Crucially, the framework effectively suppresses hallucinated content, a common issue in generative models. These results verify the practical utility of the Crop GraphRAG framework for vertical-domain question answering. By mitigating the limitations of large language models in specialized agricultural contexts, this study provides a pragmatic tool for intelligent QA in the agricultural domain and advances the application of AI in crop protection.

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Publication Details

Journal
Frontiers in Plant Science
Published
2026-01-05
DOI
https://doi.org/10.3389/fpls.2025.1696872
Primary Topic
Topic Modeling
Type
article
Field-Weighted Citation Impact
0.00

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article

Crop GraphRAG: pest and disease knowledge base Q&A system for sustainable crop protection

Zhibo Meng, H. Wu, Xiaoli Wang, Jingchao Fan et al.
Frontiers in Plant Science
Topic Modeling
article

Crop GraphRAG: pest and disease knowledge base Q&A system for sustainable crop protection

Zhibo Meng, H. Wu, Xiaoli Wang, Jingchao Fan, Yonglei Li, Nengfu Xie
article en

Abstract

Intelligent prevention and control of crop diseases and pests is a critical link in safeguarding food security. However, agricultural practitioners often face fragmented information and low retrieval efficiency when seeking accurate, actionable knowledge. Furthermore, general-purpose large language models (LLMs) are prone to providing inaccurate or erroneous answers when applied to these specialized domains. To address these challenges, we assembled a large-scale corpus of knowledge on crop diseases and pests. Via entity and relation extraction, we constructed a multi-relational knowledge graph covering crops, diseases, pests, symptoms, and control measures. We subsequently designed Crop GraphRAG, a new framework that integrates knowledge graphs with retrieval-augmented generation (RAG). This system enables local knowledge-base question answering by retrieving adjacency subgraphs for relevant entities alongside summary-based passage retrieval. To evaluate performance, we curated a domain-specific test suite of question-answer pairs and conducted comparative and ablation experiments. Our experiments demonstrate that the Crop GraphRAG framework offers distinct advantages in answer accuracy and coverage compared to baselines. Crucially, the framework effectively suppresses hallucinated content, a common issue in generative models. These results verify the practical utility of the Crop GraphRAG framework for vertical-domain question answering. By mitigating the limitations of large language models in specialized agricultural contexts, this study provides a pragmatic tool for intelligent QA in the agricultural domain and advances the application of AI in crop protection.

Frontiers in Plant ScienceVol. 16
Agricultural Information Institute (CN), Ministry of Agriculture and Rural Affairs (CN)
Chinese Academy of Agricultural Sciences, Agricultural Science and Technology Innovation Program
Zero hunger
Openalex Percentile: Top 97%
Topic Modeling
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