Genetic diversity and architectural dynamics of soybean centromeres

We conclude that CentGm-1 and CentGm-4 evolve independently. The observation that completely identical CentGm-4 sequences consistently appear on the same chromosome across different soybean varieties indicates a stronger chromosome-specific preference for CentGm-4. We propose a model in which replication templates within the centromere region originate from multiple CENH3-nucleosome complexes bound to CentGm sequences. Both CentGm-1 and CentGm-4 contain similar motifs with the potential to bind CENH3 protein. The findings provide a new insight into the mechanisms behind centromere diversity and dynamics.

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Publication Details

Journal
Genome biology
Published
2026-01-05
DOI
https://doi.org/10.1186/s13059-025-03924-9
Primary Topic
Chromosomal and Genetic Variations
Type
article
Field-Weighted Citation Impact
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article

Genetic diversity and architectural dynamics of soybean centromeres

Handong Su, C. L. Chen, Yicheng Huang, Monica A. Schmidt et al.
Genome biology
Chromosomal and Genetic Variations
article

Genetic diversity and architectural dynamics of soybean centromeres

Handong Su, C. L. Chen, Yicheng Huang, Monica A. Schmidt, Shipeng Song, Jianwei Zhang, Dal-Hoe Koo, Enlai Guan
article en

Abstract

We conclude that CentGm-1 and CentGm-4 evolve independently. The observation that completely identical CentGm-4 sequences consistently appear on the same chromosome across different soybean varieties indicates a stronger chromosome-specific preference for CentGm-4. We propose a model in which replication templates within the centromere region originate from multiple CENH3-nucleosome complexes bound to CentGm sequences. Both CentGm-1 and CentGm-4 contain similar motifs with the potential to bind CENH3 protein. The findings provide a new insight into the mechanisms behind centromere diversity and dynamics.

Genome biologyVol. 27(1)
University of Arizona (US), Kansas State University (US), Huazhong Agricultural University (CN), Agricultural Genomics Institute at Shenzhen (CN)
Life in Land
Openalex Percentile: Top 97%
Chromosomal and Genetic Variations
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